a8ccb8e116
- [x] add `concretize.lp`, `spack.yaml`, etc. to licensed files
- [x] update all licensed files to say 2013-2021 using
`spack license update-copyright-year`
- [x] appease mypy with some additions to package.py that needed
for oneapi.py
188 lines
7.0 KiB
Python
188 lines
7.0 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Adios(AutotoolsPackage):
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"""The Adaptable IO System (ADIOS) provides a simple,
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flexible way for scientists to describe the
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data in their code that may need to be written,
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read, or processed outside of the running simulation.
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"""
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homepage = "http://www.olcf.ornl.gov/center-projects/adios/"
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url = "https://github.com/ornladios/ADIOS/archive/v1.12.0.tar.gz"
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git = "https://github.com/ornladios/ADIOS.git"
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maintainers = ['ax3l']
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version('develop', branch='master')
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version('1.13.1', sha256='b1c6949918f5e69f701cabfe5987c0b286793f1057d4690f04747852544e157b')
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version('1.13.0', sha256='7b5ee8ff7a5f7215f157c484b20adb277ec0250f87510513edcc25d2c4739f50')
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version('1.12.0', sha256='22bc22c157322abec2d1a0817a259efd9057f88c2113e67d918a9a5ebcb3d88d')
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version('1.11.1', sha256='9f5c10b9471a721ba57d1cf6e5a55a7ad139a6c12da87b4dc128539e9eef370e')
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version('1.11.0', sha256='e89d14ccbe7181777225e0ba6c272c0941539b8ccd440e72ed5a9457441dae83')
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version('1.10.0', sha256='6713069259ee7bfd4d03f47640bf841874e9114bab24e7b0c58e310c42a0ec48')
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version('1.9.0', sha256='23b2bb70540d51ab0855af0b205ca484fd1bd963c39580c29e3133f9e6fffd46')
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variant('shared', default=True,
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description='Builds a shared version of the library')
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variant('fortran', default=False,
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description='Enable Fortran bindings support')
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variant('mpi', default=True,
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description='Enable MPI support')
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variant('infiniband', default=False,
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description='Enable infiniband support')
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# transforms
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variant('zlib', default=True,
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description='Enable zlib transform support')
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variant('bzip2', default=False,
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description='Enable bzip2 transform support')
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variant('szip', default=False,
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description='Enable szip transform support')
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variant('zfp', default=True,
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description='Enable ZFP transform support')
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variant('sz', default=True,
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description='Enable SZ transform support')
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variant('lz4', default=True,
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description='Enable LZ4 transform support')
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variant('blosc', default=True,
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description='Enable Blosc transform support')
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# transports and serial file converters
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variant('hdf5', default=False,
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description='Enable parallel HDF5 transport and serial bp2h5 ' +
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'converter')
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variant('netcdf', default=False, description='Enable netcdf support')
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variant(
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'staging', values=any_combination_of('flexpath', 'dataspaces'),
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description='Enable dataspaces and/or flexpath staging transports'
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)
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depends_on('autoconf', type='build')
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depends_on('automake', type='build')
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depends_on('m4', type='build')
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depends_on('libtool', type='build')
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depends_on('python', type='build')
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depends_on('mpi', when='+mpi')
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# optional transformations
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depends_on('zlib', when='+zlib')
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depends_on('bzip2', when='+bzip2')
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depends_on('szip', when='+szip')
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depends_on('sz@:1.4.10', when='@:1.12.0 +sz')
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depends_on('sz@1.4.11.0:1.4.11.99', when='@1.13.0 +sz')
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depends_on('sz@1.4.12.3:1.4.12.99', when='@1.13.1: +sz')
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depends_on('zfp@0.5.1:0.5.99', when='+zfp')
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depends_on('lz4', when='+lz4')
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depends_on('c-blosc@1.12.0:', when='+blosc')
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# optional transports & file converters
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depends_on('hdf5@1.8:+hl+mpi', when='+hdf5')
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depends_on('netcdf-c', when='+netcdf')
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depends_on('libevpath', when='staging=flexpath')
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depends_on('dataspaces+mpi', when='staging=dataspaces')
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for p in ['+hdf5', '+netcdf', 'staging=flexpath', 'staging=dataspaces']:
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conflicts(p, when='~mpi')
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build_directory = 'spack-build'
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# ADIOS uses the absolute Python path, which is too long and results in
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# "bad interpreter" errors - but not applicable for 1.9.0
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patch('python.patch', when='@1.10.0:')
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# Fix ADIOS <=1.10.0 compile error on HDF5 1.10+
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# https://github.com/ornladios/ADIOS/commit/3b21a8a41509
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# https://github.com/spack/spack/issues/1683
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patch('adios_1100.patch', when='@:1.10.0^hdf5@1.10:')
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# ADIOS 1.13.1 is written for ZFP 0.5.0 interfaces
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# https://github.com/ornladios/ADIOS/pull/204
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patch('zfp051.patch', when='@1.11.0:1.13.1')
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# Fix a bug in configure.ac that causes automake issues on RHEL 7.7
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patch('https://github.com/ornladios/ADIOS/pull/207.patch', when='@1.12.0: +mpi',
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sha256='01113e9efb929d71c28bf33cc8b7f215d85195ec700e99cb41164e2f8f830640')
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def validate(self, spec):
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"""Checks if incompatible variants have been activated at the same time
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Args:
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spec: spec of the package
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Raises:
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RuntimeError: in case of inconsistencies
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"""
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if '+fortran' in spec and not self.compiler.fc:
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msg = 'cannot build a fortran variant without a fortran compiler'
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raise RuntimeError(msg)
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def with_or_without_hdf5(self, activated):
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if activated:
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return '--with-phdf5={0}'.format(
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self.spec['hdf5'].prefix
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)
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return '--without-phdf5'
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def setup_build_environment(self, env):
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# https://github.com/ornladios/ADIOS/issues/206
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if self.spec.satisfies('%gcc@10: +fortran'):
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env.set('FCFLAGS', '-fallow-argument-mismatch')
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def configure_args(self):
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spec = self.spec
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self.validate(spec)
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extra_args = [
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# required, otherwise building its python bindings will fail
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'CFLAGS={0}'.format(self.compiler.cc_pic_flag)
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]
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extra_args += self.enable_or_disable('shared')
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extra_args += self.enable_or_disable('fortran')
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if '+mpi' in spec:
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env['MPICC'] = spec['mpi'].mpicc
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env['MPICXX'] = spec['mpi'].mpicxx
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extra_args += self.with_or_without('mpi', activation_value='prefix')
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extra_args += self.with_or_without('infiniband')
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# Transforms
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variants = ['zlib', 'bzip2', 'szip']
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if spec.satisfies('@1.11.0:'):
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variants += ['zfp']
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if spec.satisfies('@1.12.0:'):
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variants += ['sz', 'lz4']
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if spec.satisfies('@1.13.0:'):
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extra_args += self.with_or_without(
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'blosc',
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activation_value=lambda x: spec['c-blosc'].prefix
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)
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# External I/O libraries
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variants += ['hdf5', 'netcdf']
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for x in variants:
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extra_args += self.with_or_without(x, activation_value='prefix')
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# Staging transports
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def with_staging(name):
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if name == 'flexpath':
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return spec['libevpath'].prefix
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return spec[name].prefix
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extra_args += self.with_or_without(
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'staging',
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activation_value=with_staging
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)
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return extra_args
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