44 lines
2.1 KiB
Python
44 lines
2.1 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RWgcna(RPackage):
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"""Weighted Correlation Network Analysis
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Functions necessary to perform Weighted Correlation Network Analysis on
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high-dimensional data as originally described in Horvath and Zhang (2005)
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<doi:10.2202/1544-6115.1128> and Langfelder and Horvath (2008)
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<doi:10.1186/1471-2105-9-559>. Includes functions for rudimentary data
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cleaning, construction of correlation networks, module identification,
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summarization, and relating of variables and modules to sample traits. Also
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includes a number of utility functions for data manipulation and
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visualization."""
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homepage = "https://cloud.r-project.org/package=WGCNA"
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url = "https://cloud.r-project.org/src/contrib/WGCNA_1.68.tar.gz"
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list_url = "https://cloud.r-project.org/src/contrib/Archive/WGCNA/"
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version('1.69', sha256='2ea152d45b2d4f0e40b4b9f7b5ea8a96e230f7744ece8be27bdba96cf39d5008')
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version('1.68', sha256='0a04f15a20817f9260ae1896eda3be83a7f4855a27a348df85c7f4d376f1efe8')
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version('1.67', sha256='c9cc9989763b2c80835489eabd38d9ee35b204305044d115ca7c775a103f6824')
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version('1.64-1', sha256='961a890cda40676ba533cd6de2b1d4f692addd16363f874c82ba8b65dd2d0db6')
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depends_on('r@3.0:', type=('build', 'run'))
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depends_on('r-dynamictreecut@1.62:', type=('build', 'run'))
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depends_on('r-fastcluster', type=('build', 'run'))
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depends_on('r-matrixstats@0.8.1:', type=('build', 'run'))
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depends_on('r-hmisc', type=('build', 'run'))
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depends_on('r-impute', type=('build', 'run'))
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depends_on('r-foreach', type=('build', 'run'))
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depends_on('r-doparallel', type=('build', 'run'))
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depends_on('r-preprocesscore', type=('build', 'run'))
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depends_on('r-survival', type=('build', 'run'))
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depends_on('r-go-db', type=('build', 'run'))
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depends_on('r-annotationdbi', type=('build', 'run'))
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depends_on('r-rcpp@0.11.0:', type=('build', 'run'))
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depends_on('r-robust', when='@:1.68', type=('build', 'run'))
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