50 lines
2.4 KiB
Python
50 lines
2.4 KiB
Python
##############################################################################
|
|
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
|
|
# Produced at the Lawrence Livermore National Laboratory.
|
|
#
|
|
# This file is part of Spack.
|
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
|
# LLNL-CODE-647188
|
|
#
|
|
# For details, see https://github.com/spack/spack
|
|
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
|
|
#
|
|
# This program is free software; you can redistribute it and/or modify
|
|
# it under the terms of the GNU Lesser General Public License (as
|
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
|
#
|
|
# This program is distributed in the hope that it will be useful, but
|
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
|
# conditions of the GNU Lesser General Public License for more details.
|
|
#
|
|
# You should have received a copy of the GNU Lesser General Public
|
|
# License along with this program; if not, write to the Free Software
|
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
|
##############################################################################
|
|
from spack import *
|
|
|
|
|
|
class RTopgo(RPackage):
|
|
"""topGO package provides tools for testing GO terms while accounting
|
|
for the topology of the GO graph. Different test statistics and
|
|
different methods for eliminating local similarities and dependencies
|
|
between GO terms can be implemented and applied."""
|
|
|
|
homepage = "https://www.bioconductor.org/packages/topGO/"
|
|
url = "https://git.bioconductor.org/packages/topGO"
|
|
|
|
version('2.30.1', git='https://git.bioconductor.org/packages/topGO', commit='b1469ce1d198ccb73ef79ca22cab81659e16dbaa')
|
|
version('2.28.0', git='https://git.bioconductor.org/packages/topGO', commit='066a975d460046cce33fb27e74e6a0ebc33fd716')
|
|
|
|
depends_on('r@3.4.0:3.4.9')
|
|
depends_on('r-dbi', type=('build', 'run'))
|
|
depends_on('r-matrixstats', type=('build', 'run'))
|
|
depends_on('r-lattice', type=('build', 'run'))
|
|
depends_on('r-sparsem@0.73:', type=('build', 'run'))
|
|
depends_on('r-annotationdbi@1.7.19:', type=('build', 'run'))
|
|
depends_on('r-go-db@2.3.0:', type=('build', 'run'))
|
|
depends_on('r-biobase@2.0.0:', type=('build', 'run'))
|
|
depends_on('r-graph@1.14.0:', type=('build', 'run'))
|
|
depends_on('r-biocgenerics@0.13.6:', type=('build', 'run'))
|