62927654dd
We'd like to use a consistent checksum scheme everywhere so that we can:
a) incorporate archive checksums into our specs and have a
consistent hashing algorithm across all specs.
b) index mirrors with a consistent type of checksum, and not one that
is dependent on how spack packages are written.
- [x] convert existing md5, sha224, sha512, sha1 checksums to sha256
36 lines
1.3 KiB
Python
36 lines
1.3 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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import os.path
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class Haploview(Package):
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"""Haploview is designed to simplify and expedite the process of haplotype
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analysis."""
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homepage = "http://www.broadinstitute.org/haploview/haploview"
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url = "https://downloads.sourceforge.net/project/haploview/release/Haploview4.1.jar"
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version('4.1', sha256='b3ffe4c3d8bbab6af5eebf89a2dccdb185280088f70ae84c84be60f85f10201d', expand=False)
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depends_on('java', type=('build', 'run'))
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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jar_file = 'Haploview{v}.jar'.format(v=self.version)
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install(jar_file, prefix.bin)
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script_sh = join_path(os.path.dirname(__file__), "haploview.sh")
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script = prefix.bin.haploview
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install(script_sh, script)
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set_executable(script)
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java = self.spec['java'].prefix.bin.java
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kwargs = {'ignore_absent': False, 'backup': False, 'string': False}
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filter_file('^java', java, script, **kwargs)
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filter_file('haploview.jar', join_path(prefix.bin, jar_file),
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script, **kwargs)
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