34 lines
1.2 KiB
Python
34 lines
1.2 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Paml(MakefilePackage):
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"""PAML is a package of programs for phylogenetic analyses of DNA or
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protein sewuences using maximum likelihood."""
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homepage = "http://abacus.gene.ucl.ac.uk/software/paml.html"
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url = "http://abacus.gene.ucl.ac.uk/software/paml4.9h.tgz"
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version('4.9h', sha256='623bf6cf4a018a4e7b4dbba189c41d6c0c25fdca3a0ae24703b82965c772edb3')
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build_directory = 'src'
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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with working_dir(self.build_directory):
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install('baseml', prefix.bin)
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install('basemlg', prefix.bin)
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install('chi2', prefix.bin)
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install('codeml', prefix.bin)
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install('evolver', prefix.bin)
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install('infinitesites', prefix.bin)
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install('mcmctree', prefix.bin)
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install('pamp', prefix.bin)
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install('yn00', prefix.bin)
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install_tree('dat', prefix.dat)
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install_tree('Technical', prefix.Technical)
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