30 lines
1.3 KiB
Python
30 lines
1.3 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RAffyrnadegradation(RPackage):
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"""Analyze and correct probe positional bias in microarray data due to RNA
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degradation.
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The package helps with the assessment and correction of RNA degradation
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effects in Affymetrix 3' expression arrays. The parameter d gives a
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robust and accurate measure of RNA integrity. The correction removes the
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probe positional bias, and thus improves comparability of samples that
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are affected by RNA degradation."""
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homepage = "https://bioconductor.org/packages/AffyRNADegradation"
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git = "https://git.bioconductor.org/packages/AffyRNADegradation.git"
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version('1.30.0', commit='620c464fb09248e1c7a122828eab59a4fb778cc1')
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version('1.28.0', commit='aff91d78fa9e76edaa3ef6a9a43b98b86cc44c24')
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version('1.26.0', commit='6ab03ad624701464280bf7dfe345d200e846298a')
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version('1.24.0', commit='1f85f3da4720cef94623828713eb84d8accbcf8a')
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version('1.22.0', commit='0fa78f8286494711a239ded0ba587b0de47c15d3')
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depends_on('r@2.9.0:', type=('build', 'run'))
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depends_on('r-affy', type=('build', 'run'))
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