29 lines
941 B
Python
29 lines
941 B
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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import glob
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class Vardictjava(Package):
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"""VarDictJava is a variant discovery program written in Java.
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It is a partial Java port of VarDict variant caller."""
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homepage = "https://github.com/AstraZeneca-NGS/VarDictJava"
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url = "https://github.com/AstraZeneca-NGS/VarDictJava/releases/download/v1.5.1/VarDict-1.5.1.tar"
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version('1.5.1', sha256='f1d710d238e8ab41b02a99fa8698baeee8c8668635a847b826913dd03a9176b9')
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depends_on('java@8:', type='run')
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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install('bin/VarDict', prefix.bin)
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mkdirp(prefix.lib)
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files = [x for x in glob.glob("lib/*jar")]
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for f in files:
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install(f, prefix.lib)
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