42 lines
1.2 KiB
Python
42 lines
1.2 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Pasta(Package):
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"""PASTA (Practical Alignment using SATe and Transitivity)"""
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homepage = "https://github.com/smirarab/pasta"
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git = "https://github.com/smirarab/pasta"
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version('1.8.3', commit='738bec5e0d5a18d013c193d7453374bed47456c9')
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depends_on('python@2.7:')
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depends_on('py-dendropy')
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depends_on('java')
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resource(
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name='tools',
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git='https://github.com/smirarab/sate-tools-linux',
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commit='90fb074d61af554e94d1a67583dd3a80b11417ea',
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destination='.'
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)
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def setup_build_environment(self, env):
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tools = join_path(self.prefix, 'sate-tools-linux')
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env.set('PASTA_TOOLS_DEVDIR', tools)
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def install(self, spec, prefix):
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# build process for pasta is very hacky -- uses hard links to source
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# install the tree first so links don't break
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install_tree('.', prefix)
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# run the 'build' from within the prefix
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python = which('python2.7')
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with working_dir(prefix):
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python('setup.py', 'develop')
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