29 lines
1.0 KiB
Python
29 lines
1.0 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Pbsuite(Package):
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"""PBJelly is a highly automated pipeline that aligns long sequencing
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reads (such as PacBio RS reads or long 454 reads in fasta format)
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to high-confidence draft assembles."""
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homepage = "https://sourceforge.net/p/pb-jelly/wiki/Home/"
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url = "https://downloads.sourceforge.net/project/pb-jelly/PBSuite_15.8.24.tgz"
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version('15.8.24', sha256='1be082faa62cb3f701c78498db8544c844c3d6d3e3524fecf00a12e82a97e12b')
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depends_on('blasr@1.3.1:', type='run')
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depends_on('python@2.7:', type='run')
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depends_on('py-networkx@1.1:', type='run')
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def install(self, spec, prefix):
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install_tree('pbsuite', prefix.pbsuite)
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install_tree('bin', prefix.bin)
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def setup_run_environment(self, env):
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env.prepend_path('PYTHONPATH', self.prefix)
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