73c978ddd9
Replace use of `shutil.copytree` with `copy_tree` and `install_tree` functions in `llnl.util.filesystem`. - `copy_tree` copies without setting permissions. It should be used to copy files around in the build directory. - `install_tree` copies files and sets permissions. It should be used to copy files into the installation directory. - `install` and `copy` are analogous single-file functions. - add more extensive tests for these functions - update packages to use these functions.
49 lines
2.0 KiB
Python
49 lines
2.0 KiB
Python
##############################################################################
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# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Casper(MakefilePackage):
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"""CASPER (Context-Aware Scheme for Paired-End Read) is state-of-the art
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merging tool in terms of accuracy and robustness. Using this
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sophisticated merging method, we could get elongated reads from the
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forward and reverse reads."""
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homepage = "http://best.snu.ac.kr/casper/index.php?name=main"
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url = "http://best.snu.ac.kr/casper/program/casper_v0.8.2.tar.gz"
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version('0.8.2', '9e83d32ff46b876f33eb1d7b545ec9c2')
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depends_on('jellyfish@2.2.3:')
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depends_on('boost')
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conflicts('%gcc@7.1.0')
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def install(self, spec, prefix):
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install_tree('.', prefix)
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def setup_environment(self, spack_env, run_env):
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run_env.prepend_path('PATH', self.spec.prefix)
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