a8ccb8e116
- [x] add `concretize.lp`, `spack.yaml`, etc. to licensed files
- [x] update all licensed files to say 2013-2021 using
`spack license update-copyright-year`
- [x] appease mypy with some additions to package.py that needed
for oneapi.py
32 lines
1.1 KiB
Python
32 lines
1.1 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Prokka(Package):
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"""Prokka is a software tool to annotate bacterial, archaeal and viral
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genomes quickly and produce standards-compliant output files."""
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homepage = "https://github.com/tseemann/prokka"
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url = "https://github.com/tseemann/prokka/archive/v1.14.5.tar.gz"
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version('1.14.6', sha256='f730b5400ea9e507bfe6c5f3d22ce61960a897195c11571c2e1308ce2533faf8')
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depends_on('perl', type='run')
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depends_on('perl-bioperl', type='run')
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depends_on('perl-xml-simple', type='run')
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depends_on('perl-bio-searchio-hmmer', type='run')
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depends_on('hmmer', type='run')
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depends_on('blast-plus', type='run')
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depends_on('prodigal', type='run')
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depends_on('tbl2asn', type='run')
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def install(self, spec, prefix):
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install_tree('bin', prefix.bin)
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install_tree('binaries', prefix.binaries)
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install_tree('db', prefix.db)
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install_tree('doc', prefix.doc)
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