a8ccb8e116
- [x] add `concretize.lp`, `spack.yaml`, etc. to licensed files
- [x] update all licensed files to say 2013-2021 using
`spack license update-copyright-year`
- [x] appease mypy with some additions to package.py that needed
for oneapi.py
41 lines
1.5 KiB
Python
41 lines
1.5 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Metabat(SConsPackage):
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"""MetaBAT, an efficient tool for accurately reconstructing single
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genomes from complex microbial communities."""
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homepage = "https://bitbucket.org/berkeleylab/metabat"
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url = "https://bitbucket.org/berkeleylab/metabat/get/v2.12.1.tar.gz"
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version('2.14', sha256='d43d5e91afa8f2d211a913739127884669516bfbed870760597fcee2b513abe2')
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version('2.13', sha256='aa75a2b62ec9588add4c288993821bab5312a83b1259ff0d508c215133492d74')
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version('2.12.1', sha256='e3aca0656f56f815135521360dc56667ec26af25143c3a31d645fef1a96abbc2')
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version('2.11.2', sha256='9baf81b385e503e71792706237c308a21ff9177a3211c79057dcecf8434e9a67')
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depends_on('boost@1.55.0:', type=('build', 'run'))
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depends_on('perl', type='run')
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depends_on('zlib', type='link')
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depends_on('ncurses', type='link')
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def setup_build_environment(self, env):
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env.set('BOOST_ROOT', self.spec['boost'].prefix)
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def install_args(self, spec, prefix):
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return ["PREFIX={0}".format(prefix)]
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@run_after('build')
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def fix_perl_scripts(self):
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filter_file(r'#!/usr/bin/perl',
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'#!/usr/bin/env perl',
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'aggregateBinDepths.pl')
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filter_file(r'#!/usr/bin/perl',
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'#!/usr/bin/env perl',
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'aggregateContigOverlapsByBin.pl')
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