33 lines
1.1 KiB
Python
33 lines
1.1 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Tabix(MakefilePackage):
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"""Generic indexer for TAB-delimited genome position files"""
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homepage = "https://github.com/samtools/tabix"
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git = "https://github.com/samtools/tabix.git"
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version('2013-12-16', commit='1ae158ac79b459f5feeed7490c67519b14ce9f35')
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depends_on('perl', type=('build', 'run'))
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depends_on('python', type=('build', 'run'))
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depends_on('zlib', type='link')
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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mkdirp(prefix.share.man.man1)
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install('tabix', prefix.bin)
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install('bgzip', prefix.bin)
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install('tabix.py', prefix.bin)
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install('tabix.1', prefix.share.man.man1)
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install('tabix.tex', prefix.share)
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install('TabixReader.java', prefix.bin)
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install('libtabix.a', prefix.lib)
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install_tree('perl', prefix.perl)
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install_tree('python', prefix.python)
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