77b2e578ec
Users can add test() methods to their packages to run smoke tests on
installations with the new `spack test` command (the old `spack test` is
now `spack unit-test`). spack test is environment-aware, so you can
`spack install` an environment and then run `spack test run` to run smoke
tests on all of its packages. Historical test logs can be perused with
`spack test results`. Generic smoke tests for MPI implementations, C,
C++, and Fortran compilers as well as specific smoke tests for 18
packages.
Inside the test method, individual tests can be run separately (and
continue to run best-effort after a test failure) using the `run_test`
method. The `run_test` method encapsulates finding test executables,
running and checking return codes, checking output, and error handling.
This handles the following trickier aspects of testing with direct
support in Spack's package API:
- [x] Caching source or intermediate build files at build time for
use at test time.
- [x] Test dependencies,
- [x] packages that require a compiler for testing (such as library only
packages).
See the packaging guide for more details on using Spack testing support.
Included is support for package.py files for virtual packages. This does
not change the Spack interface, but is a major change in internals.
Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
Co-authored-by: wspear <wjspear@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
120 lines
6.6 KiB
Python
120 lines
6.6 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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class PyScipy(PythonPackage):
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"""SciPy (pronounced "Sigh Pie") is a Scientific Library for Python.
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It provides many user-friendly and efficient numerical routines such
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as routines for numerical integration and optimization."""
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homepage = "https://www.scipy.org/"
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url = "https://pypi.io/packages/source/s/scipy/scipy-1.5.4.tar.gz"
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git = "https://github.com/scipy/scipy.git"
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maintainers = ['adamjstewart']
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install_time_test_callbacks = ['install_test', 'import_module_test']
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import_modules = [
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'scipy', 'scipy._build_utils', 'scipy._lib', 'scipy.cluster',
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'scipy.constants', 'scipy.fftpack', 'scipy.integrate',
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'scipy.interpolate', 'scipy.io', 'scipy.linalg', 'scipy.misc',
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'scipy.ndimage', 'scipy.odr', 'scipy.optimize', 'scipy.signal',
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'scipy.sparse', 'scipy.spatial', 'scipy.special', 'scipy.stats',
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'scipy.io.arff', 'scipy.io.harwell_boeing', 'scipy.io.matlab',
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'scipy.optimize._lsq', 'scipy.sparse.csgraph', 'scipy.sparse.linalg',
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'scipy.sparse.linalg.dsolve', 'scipy.sparse.linalg.eigen',
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'scipy.sparse.linalg.isolve', 'scipy.sparse.linalg.eigen.arpack',
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'scipy.sparse.linalg.eigen.lobpcg', 'scipy.special._precompute'
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]
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version('master', branch='master')
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version('1.5.4', sha256='4a453d5e5689de62e5d38edf40af3f17560bfd63c9c5bd228c18c1f99afa155b')
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version('1.5.3', sha256='ddae76784574cc4c172f3d5edd7308be16078dd3b977e8746860c76c195fa707')
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version('1.5.2', sha256='066c513d90eb3fd7567a9e150828d39111ebd88d3e924cdfc9f8ce19ab6f90c9')
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version('1.5.1', sha256='039572f0ca9578a466683558c5bf1e65d442860ec6e13307d528749cfe6d07b8')
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version('1.5.0', sha256='4ff72877d19b295ee7f7727615ea8238f2d59159df0bdd98f91754be4a2767f0')
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version('1.4.1', sha256='dee1bbf3a6c8f73b6b218cb28eed8dd13347ea2f87d572ce19b289d6fd3fbc59')
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version('1.4.0', sha256='31f7cfa93b01507c935c12b535e24812594002a02a56803d7cd063e9920d25e8')
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version('1.3.3', sha256='64bf4e8ae0db2d42b58477817f648d81e77f0b381d0ea4427385bba3f959380a')
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version('1.3.2', sha256='a03939b431994289f39373c57bbe452974a7da724ae7f9620a1beee575434da4')
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version('1.3.1', sha256='2643cfb46d97b7797d1dbdb6f3c23fe3402904e3c90e6facfe6a9b98d808c1b5')
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version('1.3.0', sha256='c3bb4bd2aca82fb498247deeac12265921fe231502a6bc6edea3ee7fe6c40a7a')
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version('1.2.3', sha256='ecbe6413ca90b8e19f8475bfa303ac001e81b04ec600d17fa7f816271f7cca57')
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version('1.2.2', sha256='a4331e0b8dab1ff75d2c67b5158a8bb9a83c799d7140094dda936d876c7cfbb1')
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version('1.2.1', sha256='e085d1babcb419bbe58e2e805ac61924dac4ca45a07c9fa081144739e500aa3c')
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version('1.1.0', sha256='878352408424dffaa695ffedf2f9f92844e116686923ed9aa8626fc30d32cfd1')
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version('1.0.0', sha256='87ea1f11a0e9ec08c264dc64551d501fa307289460705f6fccd84cbfc7926d10')
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version('0.19.1', sha256='a19a2ca7a7336495ec180adeaa0dfdcf41e96dbbee90d51c3ed828ba570884e6')
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version('0.18.1', sha256='8ab6e9c808bf2fb3e8576cd8cf07226d9cdc18b012c06d9708429a821ac6634e')
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version('0.17.0', sha256='f600b755fb69437d0f70361f9e560ab4d304b1b66987ed5a28bdd9dd7793e089')
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version('0.15.1', sha256='a212cbc3b79e9a563aa45fc5c517b3499198bd7eb7e7be1e047568a5f48c259a')
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version('0.15.0', sha256='0c74e31e08acc8bf9b6ceb9bced73df2ae0cc76003e0366350bc7b26292bf8b1')
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depends_on('python@2.6:2.8,3.2:', type=('build', 'link', 'run'))
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depends_on('python@2.7:2.8,3.4:', when='@0.18:', type=('build', 'link', 'run'))
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depends_on('python@3.5:', when='@1.3:', type=('build', 'link', 'run'))
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depends_on('python@3.6:', when='@1.5:', type=('build', 'link', 'run'))
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depends_on('py-setuptools', type='build')
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depends_on('py-pybind11@2.2.4:', when='@1.4.0:', type=('build', 'link'))
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depends_on('py-pybind11@2.4.0:', when='@1.4.1:', type=('build', 'link'))
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depends_on('py-pybind11@2.4.3:', when='@1.5.0:', type=('build', 'link'))
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depends_on('py-numpy@1.5.1:+blas+lapack', type=('build', 'link', 'run'))
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depends_on('py-numpy@1.6.2:+blas+lapack', when='@0.16:', type=('build', 'link', 'run'))
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depends_on('py-numpy@1.7.1:+blas+lapack', when='@0.18:', type=('build', 'link', 'run'))
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depends_on('py-numpy@1.8.2:+blas+lapack', when='@0.19:', type=('build', 'link', 'run'))
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depends_on('py-numpy@1.13.3:+blas+lapack', when='@1.3:', type=('build', 'link', 'run'))
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depends_on('py-numpy@1.14.5:+blas+lapack', when='@1.5:', type=('build', 'link', 'run'))
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depends_on('py-pytest', type='test')
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# NOTE: scipy picks up Blas/Lapack from numpy, see
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# http://www.scipy.org/scipylib/building/linux.html#step-4-build-numpy-1-5-0
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depends_on('blas')
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depends_on('lapack')
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# https://github.com/scipy/scipy/issues/12860
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patch('https://git.sagemath.org/sage.git/plain/build/pkgs/scipy/patches/extern_decls.patch?id=711fe05025795e44b84233e065d240859ccae5bd',
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sha256='5433f60831cb554101520a8f8871ac5a32c95f7a971ccd68b69049535b106780', when='@1.2:1.5.3')
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def setup_build_environment(self, env):
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# https://github.com/scipy/scipy/issues/9080
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env.set('F90', spack_fc)
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# https://github.com/scipy/scipy/issues/11611
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if self.spec.satisfies('@:1.4 %gcc@10:'):
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env.set('FFLAGS', '-fallow-argument-mismatch')
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def build_args(self, spec, prefix):
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args = []
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if spec.satisfies('%fj'):
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args.extend(['config_fc', '--fcompiler=fj'])
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# Build in parallel
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# Known problems with Python 3.5+
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# https://github.com/spack/spack/issues/7927
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# https://github.com/scipy/scipy/issues/7112
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if not spec.satisfies('^python@3.5:'):
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args.extend(['-j', str(make_jobs)])
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return args
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def build_test(self):
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# `setup.py test` is not supported. Use one of the following
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# instead:
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#
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# - `python runtests.py` (to build and test)
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# - `python runtests.py --no-build` (to test installed scipy)
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# - `>>> scipy.test()` (run tests for installed scipy
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# from within an interpreter)
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pass
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def install_test(self):
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# Change directories due to the following error:
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#
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# ImportError: Error importing scipy: you should not try to import
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# scipy from its source directory; please exit the scipy
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# source tree, and relaunch your python interpreter from there.
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with working_dir('spack-test', create=True):
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python('-c', 'import scipy; scipy.test("full", verbose=2)')
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