42 lines
1.4 KiB
Python
42 lines
1.4 KiB
Python
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class RaxmlNg(CMakePackage):
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"""RAxML-NG is a phylogenetic tree inference tool which uses
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maximum-likelihood (ML) optimality criterion.
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Its search heuristic is based on iteratively performing a series
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of Subtree Pruning and Regrafting (SPR) moves,
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which allows to quickly navigate to the best-known ML tree.
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RAxML-NG is a successor of RAxML (Stamatakis 2014) and leverages
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the highly optimized likelihood computation implemented in libpll
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(Flouri et al. 2014)."""
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homepage = "https://github.com/amkozlov/raxml-ng/wiki"
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url = "https://github.com/amkozlov/raxml-ng/archive/1.0.1.tar.gz"
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git = "https://github.com/amkozlov/raxml-ng.git"
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license("AGPL-3.0-only")
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version("1.1.0", submodules=True)
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version("1.0.2", submodules=True)
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version("1.0.1", submodules=True)
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depends_on("c", type="build") # generated
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depends_on("cxx", type="build") # generated
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variant("mpi", default=True, description="Use MPI")
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depends_on("bison")
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depends_on("flex")
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depends_on("gmp")
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depends_on("mpi", when="+mpi")
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def cmake_args(self):
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return [self.define_from_variant("USE_MPI", "mpi")]
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