36 lines
1.3 KiB
Python
36 lines
1.3 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Minimap2(PythonPackage):
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"""Minimap2 is a versatile sequence alignment program that aligns DNA or
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mRNA sequences against a large reference database.
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Mappy provides a convenient interface to minimap2."""
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homepage = "https://github.com/lh3/minimap2"
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url = "https://github.com/lh3/minimap2/releases/download/v2.2/minimap2-2.2.tar.bz2"
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version('2.14', sha256='9088b785bb0c33488ca3a27c8994648ce21a8be54cb117f5ecee26343facd03b')
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version('2.10', sha256='52b36f726ec00bfca4a2ffc23036d1a2b5f96f0aae5a92fd826be6680c481c20')
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version('2.2', sha256='7e8683aa74c4454a8cfe3821f405c4439082e24c152b4b834fdb56a117ecaed9')
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conflicts('target=aarch64:', when='@:2.10')
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depends_on('zlib', type='link')
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depends_on('py-cython', type='build')
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@run_after('install')
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def install_minimap2(self):
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make_arg = []
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if self.spec.target.family == 'aarch64':
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make_arg.extend([
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'arm_neon=1',
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'aarch64~1'
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])
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make(*make_arg)
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mkdirp(prefix.bin)
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install('minimap2', prefix.bin)
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