7b053fde89
* added mlst and deps * added install() to any2fasta * added script dependencies, builds OK * fixed style * Update var/spack/repos/builtin/packages/any2fasta/package.py Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
37 lines
1.2 KiB
Python
37 lines
1.2 KiB
Python
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class Mlst(Package):
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"""Scan contig files against traditional PubMLST typing schemes"""
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homepage = "https://github.com/tseemann/mlst"
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url = "https://github.com/tseemann/mlst/archive/refs/tags/v2.22.1.tar.gz"
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version("2.22.1", sha256="a8f64d7cb961a8e422e96a19309ad8707f8792d9f755a9e5a1f5742986d19bca")
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depends_on("perl@5.26:", type="run")
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depends_on("perl-moo", type="run")
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depends_on("perl-list-moreutils", type="run")
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depends_on("perl-json", type="run")
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depends_on("perl-file-which", type="run")
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depends_on("blast-plus@2.9.0:", type="run")
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depends_on("any2fasta", type="run")
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# dependencies for scripts
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depends_on("parallel", type="run")
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depends_on("curl", type="run")
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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mkdirp(prefix.db)
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mkdirp(prefix.perl5)
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install_tree("bin", prefix.bin)
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install_tree("scripts", prefix.bin)
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install_tree("db", prefix.db)
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install_tree("perl5", prefix.perl5)
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