7b95e2f050
* py-panaroo: new package * moving panaroo to branch * py-phydms: new package * added dependencies and new packages * fixed py-pypdf2 dependencies
37 lines
1.6 KiB
Python
37 lines
1.6 KiB
Python
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class PyPhydms(PythonPackage):
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"""phydms enables phylogenetic analyses using deep mutational scanning data
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to inform the substitution models. It implements Experimentally informed
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codon models (ExpCM) for phylogenetic inference and the detection of
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biologically interesting selection."""
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homepage = "http://jbloomlab.github.io/phydms"
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pypi = "phydms/phydms-2.4.1.tar.gz"
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version('2.4.1', sha256='04eb50bdb07907214050d19214d9bc8cf2002e24ca30fbe6e0f23f013d584d5c')
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depends_on('python@3.5:', type=('build', 'run'))
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depends_on('py-setuptools', type='build')
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depends_on('py-biopython@1.67:', type=('build', 'run'))
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depends_on('py-cython@0.28:', type=('build', 'run'))
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depends_on('py-numpy@1.16.5:', type=('build', 'run'))
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depends_on('py-scipy@0.18:', type=('build', 'run'))
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depends_on('py-matplotlib@2.0.2:', type=('build', 'run'))
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depends_on('py-natsort@5.0.1:', type=('build', 'run'))
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depends_on('py-sympy@1.0:', type=('build', 'run'))
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depends_on('py-six@1.10:', type=('build', 'run'))
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depends_on('py-pandas@0.20.2:', type=('build', 'run'))
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depends_on('py-pyvolve@1.0.3:', type=('build', 'run'))
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depends_on('py-statsmodels@0.8:', type=('build', 'run'))
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depends_on('py-weblogo@3.4:3.5', type=('build', 'run'))
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depends_on('py-pypdf2@1.26:', type=('build', 'run'))
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