Todd Gamblin 7ba4c6200c relicense: remove significant contributions from peetsv ... - This is bundled into one commit to make it easy to revert if we do get consent from peetsv's company to relicense these contributions. - Revert "dialign-tx adding patch for gcc@5.4.0 (#6413)" - This reverts commit 09eeb991a2. - Remove the following LGPL-2.1 packages because we have not gotten consent to relicense them: - fast-gbs - igv - metasv - perl-xml-libxml - py-cnvkit - py-crossmap - py-pybedtools - py-pyfaidx - py-pyvcf - py-vmd-python - r-cghflasso - r-dismo - r-proc - r-spatial - r-utf8		2018-10-17 14:42:06 -07:00
..
abinit
abyss	Abyss: added variant maxk (#9280)	2018-10-02 17:27:25 -07:00
accfft
ack
activeharmony
adept-utils
adios
adios2
adlbx	Swift/T Release 1.3 (#4641)	2018-10-12 17:32:27 -07:00
adol-c
aegean
aida	New package: AIDA (#9094)	2018-09-03 21:02:06 -05:00
albany
albert
alglib
allinea-forge
allinea-reports
allpaths-lg
alquimia
alsa-lib
amg	AMG: update version (#9228)	2018-09-12 14:11:05 -06:00
amg2013
amp
ampliconnoise
amrex	amrex: add version 18.10.1 (#9550)	2018-10-17 09:12:49 -05:00
amrvis	Updating amrvis to allow building with profiling support. (#9204)	2018-09-14 17:16:35 -07:00
andi
angsd
ant	ant: add tested 1.10.0, switch build target (#9358)	2018-10-08 17:09:56 -05:00
antlr
ants
ape
aperture-photometry	aperture-photometry: new package (#9119)	2018-09-03 20:52:11 -05:00
apex
apple-libunwind	apple-libunwind: update path to library (#9265)	2018-09-18 18:48:53 -07:00
applewmproto
appres
apr
apr-util
aragorn
archer
argobots	argobots: new package starting at 1.0b1 (#9238)	2018-09-14 15:48:40 -07:00
argp-standalone
argtable
arlecore
armadillo
arpack-ng	arpack-ng: add version 3.6.3 (#9331)	2018-09-26 19:12:41 -07:00
arrow
ascent
asciidoc
aspa
aspcud
aspect	aspect: new version (#9146)	2018-09-03 20:35:45 -05:00
aspell
aspell6-de	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
aspell6-en	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
aspell6-es	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
aspera-cli
assimp	assimp: fix compile issues with intel compilers on knl/linux [a depen… (#9191)	2018-09-08 16:18:37 -05:00
astra
astral
astyle
at-spi2-atk	at-spi2-atk: add missing pkgconfig dependency (#9503)	2018-10-12 09:56:44 +02:00
at-spi2-core	new xdot.py package and necessary updates to GUI libs (#9179)	2018-10-10 19:07:51 +02:00
atk	atk package: hotfix #9099 (#9102)	2018-08-28 16:35:30 -04:00
atlas
atom-dft
atompaw
atop
augustus
autoconf	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
autodock-vina
autofact	Autofact: new package (#9317)	2018-10-09 12:26:46 -05:00
autogen	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
automaded
automake	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
axel
axl
bamdst	Bamdst: a new package. (#9113)	2018-09-04 14:35:33 -05:00
bamtools
bamutil
barrnap
bash	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
bash-completion
bats
bazel	Bazel: update env handling, add versions (#9369)	2018-09-27 19:37:31 -07:00
bbcp
bbmap
bc	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
bcftools
bcl2fastq2
bdftopcf
bdw-gc
bear
beast1
beast2
bedops
bedtools2
beforelight
benchmark
berkeley-db
bertini
bib2xhtml
bigreqsproto
binutils	binutils: add variant 'nls' for native language support (#9124)	2018-08-29 20:32:41 -07:00
bioawk
biopieces
bismark
bison	Fix missing dependencies and glibc build failures (#9106)	2018-10-10 14:17:12 +02:00
bitmap
blasr
blasr-libcpp
blast-plus	blastplus: newest version 2.7.1 (#9472)	2018-10-09 13:22:34 -07:00
blat
blaze
blis	Add blis package (#8925)	2018-08-16 11:26:43 -05:00
bliss
blitz
bmake
bml
bohrium	Update bohrium version (#9020)	2018-08-18 09:22:16 -05:00
bolt	bolt: new package starting at 1.0b1 (#9253)	2018-09-14 15:49:36 -07:00
bookleaf-cpp
boost
boostmplcartesianproduct
bowtie
bowtie2
boxlib
bpp-core
bpp-phyl
bpp-seq
bpp-suite
bracken
braker	braker: add missing deps (#9468)	2018-10-09 16:55:28 -07:00
branson
breakdancer	breakdancer: fix several issues (#9251)	2018-09-14 20:11:34 -07:00
breseq
brigand
bsseeker2
bucky
bumpversion
busco
butter
bwa
bwtool
byobu
bzip2	Fix missing dependencies and glibc build failures (#9106)	2018-10-10 14:17:12 +02:00
c-blosc
c-lime
cabana	cabana: initial commit (#9444)	2018-10-15 15:45:56 -06:00
caffe
cairo
cairomm
caliper
callpath
camellia
candle-benchmarks	Removed gtk dependency from Candle (#9451)	2018-10-09 11:38:54 -06:00
cantera
canu	Canu-Updated to lastest version:1.7.1 (#9413)	2018-10-05 10:56:03 -05:00
cap3
cares
cask
casper
catalyst	Catalyst Package: made Python mandatory at build time (#9432)	2018-10-08 09:10:03 +02:00
catch	Catch2: 2.3.0+ (#9300)	2018-09-20 15:55:18 +02:00
cbench
cblas	CBLAS: Don't hardcode BLAS library name (#9017)	2018-08-18 11:19:24 -05:00
cbtf	Update openspeedshop and cbtf version numbers (#9150)	2018-09-03 20:35:25 -05:00
cbtf-argonavis	Update openspeedshop and cbtf version numbers (#9150)	2018-09-03 20:35:25 -05:00
cbtf-argonavis-gui	qtgraph and cbtf-argonavis create proper library paths in modules (#8797)	2018-08-17 15:58:08 -07:00
cbtf-krell	Update openspeedshop and cbtf version numbers (#9150)	2018-09-03 20:35:25 -05:00
cbtf-lanl	Update openspeedshop and cbtf version numbers (#9150)	2018-09-03 20:35:25 -05:00
ccache
cctools
cdbfasta
cdd
cddlib
cdhit
cdo	add cdo releases 1.9.4 and 1.9.5 (#9079)	2018-08-23 10:27:35 -05:00
ceed
cereal
ceres-solver
cfitsio
cgal
cgm
cgns
channelflow	New package: channelflow (#9111)	2018-08-29 10:54:34 +02:00
charliecloud	add Charliecloud 0.9.2 and 0.9.3 (#9441)	2018-10-05 11:16:07 +02:00
charmpp	Charmpp: rename charm to charmpp according to ++ conventions (#9216)	2018-09-14 17:01:07 -07:00
chatterbug	chatterbug: new spack package (#8994)	2018-08-18 16:18:50 -07:00
check
chlorop
chombo
cistem	Fix version parsing for cistem package (#9260)	2018-09-18 19:29:18 -07:00
cityhash
clamr
clapack	Fix missing makefile variable in clapack package (#9016)	2018-08-18 11:19:40 -05:00
claw	CLAW Compiler: Add Spack Package (#9405)	2018-10-03 17:17:13 +02:00
cleaveland4
cleverleaf
clfft
clhep	Add new CLHEP releases and move to sha256 hashes (#9089)	2018-08-24 09:49:38 -05:00
clingo
cloc
cloog
cloverleaf
cloverleaf3d
clustalo
clustalw
cmake	cmake: add version 3.12.3 (#9528)	2018-10-15 12:40:38 -07:00
cmocka
cmor
cnmem
cnpy
cntk
cntk1bitsgd
codar-cheetah
codes	codes, dia, nest: fix pkg-config dependency (#9498)	2018-10-12 09:57:44 +02:00
coevp
cohmm
coinhsl	coinhsl: add @2015.06.23, explain versions, SHA256 (#9258)	2018-09-16 15:03:26 -05:00
colm
colordiff
comd	ecp-proxy-apps: update dependencies for release 1.0 and 1.1 (#9217)	2018-09-11 15:10:49 -06:00
commons-lang	Add MDB driver support to GDAL (#8614)	2018-08-29 12:35:56 -05:00
commons-lang3	Add MDB driver support to GDAL (#8614)	2018-08-29 12:35:56 -05:00
commons-logging	Add MDB driver support to GDAL (#8614)	2018-08-29 12:35:56 -05:00
compiz
compositeproto
conduit
constype
converge
coreutils	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
corset
cosmomc
cosp2
cp2k
cppad
cppcheck
cppgsl	new package: GSL - C++ Guideline Support Library (#9091)	2018-08-24 17:45:18 -04:00
cpprestsdk
cppunit
cppzmq
cpu-features
cpuinfo
cram
cryptopp
cscope
csdp
ctffind
cub
cube	Update scorep and friends (#9495)	2018-10-12 18:51:52 +02:00
cubelib	Update scorep and friends (#9495)	2018-10-12 18:51:52 +02:00
cubew	Update scorep and friends (#9495)	2018-10-12 18:51:52 +02:00
cuda	Added Cuda 10 (#9310)	2018-09-27 13:33:53 -07:00
cuda-memtest
cudnn	Added cudnn 7.3 (#9400)	2018-10-02 17:24:13 -07:00
cufflinks
cups
curl
cvs	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
czmq
dakota
daligner
damageproto
damselfly
darshan-runtime
darshan-util
dash
datamash	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
dataspaces
davix	Davix version update (#9304)	2018-10-04 16:12:53 -07:00
dbus	dbus: add missing pkgconfig dependency (#9497)	2018-10-12 09:55:33 +02:00
dealii	dealii: add 9.0.1 and update to sha256 (#9511)	2018-10-12 09:17:26 +02:00
dealii-parameter-gui
deconseq-standalone
dejagnu	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
delly2
denovogear
dia	codes, dia, nest: fix pkg-config dependency (#9498)	2018-10-12 09:57:44 +02:00
dialign-tx	relicense: remove significant contributions from peetsv	2018-10-17 14:42:06 -07:00
diamond
diffsplice
diffutils	Fix missing dependencies and glibc build failures (#9106)	2018-10-10 14:17:12 +02:00
direnv
discovar
discovardenovo
dislin
dlpack
dmd	Pack dlang's stdlib into dmd. (#9131)	2018-09-04 14:49:28 -05:00
dmlc-core
dmtcp
dmxproto
docbook-xml
docbook-xsl
dos2unix
dotnet-core-sdk	changed to new install_tree formalism (#9181)	2018-09-15 09:40:50 -05:00
double-conversion
doxygen
dri2proto
dri3proto
dsdp
dsrc
dtcmp
dyninst	dyninst: add dependency on libiberty (#8806)	2018-08-27 14:34:05 -07:00
ea-utils
easybuild
ebms
eccodes
eclipse-gcj-parser
ecp-proxy-apps	[WIP] Release 2.0 of the ECP Proxy Apps suite (#9368)	2018-10-02 16:35:41 -06:00
ed	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
editres
eigen	add eigen@3.3.5 (#9212)	2018-09-14 17:14:46 -07:00
elasticsearch	Added Kibana package, added Elasticsearch to 6.4.0 (#9239)	2018-09-14 10:50:20 -07:00
elemental
elfutils
elk
elpa
emacs	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
ember	ember: put all READMEs into docs and add executables in bin (#9362)	2018-09-27 05:49:15 -06:00
emboss
encodings
energyplus	energyplus: new package starting at 8.9.0 (#9262)	2018-10-09 08:45:13 -05:00
environment-modules
eospac
er
es
esmf
essl
ethminer
etsf-io
everytrace
everytrace-example
evieext
exabayes
examinimd	[WIP] Release 2.0 of the ECP Proxy Apps suite (#9368)	2018-10-02 16:35:41 -06:00
exampm
exasp2
exmcutils	Swift/T Release 1.3 (#4641)	2018-10-12 17:32:27 -07:00
exodusii
exonerate
expat
expect
express
extrae
exuberant-ctags
f90cache
fabtests
falcon
farmhash
fast-global-file-status
fasta
fastjar
fastmath
fastme
fastphase
fastq-screen
fastqc
fastqvalidator
fasttree
fastx-toolkit
fenics
fermi
fermikit
fermisciencetools
ferret
ffmpeg
fftw
figtree	figtree: new package starting at 1.4.3 (#9359)	2018-10-08 16:00:21 -05:00
fimpute
findutils	Fix missing dependencies and glibc build failures (#9106)	2018-10-10 14:17:12 +02:00
fio
fish
fixesproto
flac
flang
flann	patch flann // gcc // cmake@3.11+ (#9214)	2018-09-14 17:01:58 -07:00
flash
flatbuffers
flecsale
flecsi	flecsi: fix build (#9129)	2018-08-29 09:23:02 -06:00
flex
flint
flit
fltk
flux-core
flux-sched
fluxbox
fmt
foam-extend	install_tree: symlink handling and add 'ignore' option (#9019)	2018-08-17 22:08:38 -04:00
folly
font-adobe-75dpi
font-adobe-100dpi
font-adobe-utopia-75dpi
font-adobe-utopia-100dpi
font-adobe-utopia-type1
font-alias
font-arabic-misc
font-bh-75dpi
font-bh-100dpi
font-bh-lucidatypewriter-75dpi
font-bh-lucidatypewriter-100dpi
font-bh-ttf
font-bh-type1
font-bitstream-75dpi
font-bitstream-100dpi
font-bitstream-speedo
font-bitstream-type1
font-cronyx-cyrillic
font-cursor-misc
font-daewoo-misc
font-dec-misc
font-ibm-type1
font-isas-misc
font-jis-misc
font-micro-misc
font-misc-cyrillic
font-misc-ethiopic
font-misc-meltho
font-misc-misc
font-mutt-misc
font-schumacher-misc
font-screen-cyrillic
font-sony-misc
font-sun-misc
font-util
font-winitzki-cyrillic
font-xfree86-type1
fontcacheproto
fontconfig
fontsproto
fonttosfnt
fp16
fpc
fr-hit
freebayes
freeglut
freetype
fseq
fsl
fslsfonts
fstobdf
ftgl
funhpc
fyba
gapbs
gapcloser
gapfiller	Gapfiller 1.10 f01 (#9163)	2018-09-28 14:45:54 -05:00
gasnet	gasnet:version bump (#9127)	2018-08-29 06:48:52 +02:00
gatk	gatk: new version (#9202)	2018-09-14 13:55:52 -07:00
gaussian
gawk	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
gblocks
gcc	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
gccmakedep
gccxml
gconf
gcta
gdal	GDAL: add version 2.3.1 (#9156)	2018-09-01 07:32:24 -05:00
gdb	gdb: add lzma support by default (#9247)	2018-09-15 09:06:16 -05:00
gdbm	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
gdk-pixbuf
gdl
geant4	Add important variants to MOAB and Geant4 (#9409)	2018-10-09 17:05:49 -07:00
gearshifft
gemmlowp
genemark-et
genomefinisher
genometools
geopm
geos
gettext	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
gflags
ghost
ghostscript
ghostscript-fonts
giflib
git
git-imerge
git-lfs
gl2ps
glew
glfmultiples
glib	glib: Add 2.56.2 (#9071)	2018-08-22 14:21:54 -05:00
glibmm
glimmer
glm
global
globalarrays
globus-toolkit
glog
gloo
glpk	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
glproto
glvis
gmake	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
gmap-gsnap	gsnap: add 2018-07-04 (#9356)	2018-09-28 17:07:08 -05:00
gmime
gmodel	gmodel: switch from .zip to .tar.gz to avoid unzip dependency (#9549)	2018-10-17 09:11:43 -05:00
gmp	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
gmsh	gmsh: add git master and 4.0.0 versions (#9172)	2018-09-06 10:42:40 +02:00
gnat
gnu-prolog
gnupg
gnuplot
gnutls
go	go: Add 1.11.1 (#9493)	2018-10-11 12:08:42 +02:00
go-bootstrap
gobject-introspection
googletest
gotcha
gource
gperf	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
gperftools	gperftools@2.7: new version; homepage, URL, hash updates (#9010)	2018-08-16 19:38:02 -05:00
gplates
grackle
gradle
grandr
graph500
graphicsmagick
graphlib
graphmap
graphviz
grass
grib-api
grnboost
groff	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
gromacs
gsl	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
gslib
gtkmm
gtkorvo-atl
gtkorvo-cercs-env
gtkorvo-dill
gtkorvo-enet
gtkplus	new xdot.py package and necessary updates to GUI libs (#9179)	2018-10-10 19:07:51 +02:00
gts
guidance
guile	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
gurobi
h5hut
h5part
h5utils
h5z-zfp
hacckernels
hadoop	hadoop package: fix url and checksum (#9263)	2018-09-18 18:49:52 -07:00
halc
hapcut2
hapdip
haploview
harfbuzz
harminv
hdf
hdf5	hdf5@1.10.3: new version (#9121)	2018-08-29 10:58:24 +02:00
hdf5-blosc
help2man	Fix missing dependencies and glibc build failures (#9106)	2018-10-10 14:17:12 +02:00
hepmc
heppdt
hic-pro
highfive
highwayhash
hiop	Make builtin flag handlers available in package scope (#8668)	2018-10-09 15:18:31 -07:00
hisat2
hisea
hmmer
hoomd-blue
hpccg
hpctoolkit
hpctoolkit-externals
hpgmg
hpl
hpx
hpx5
hsakmt
hstr
htop	htop: add version 2.2.0 (#9086)	2018-08-23 18:50:01 -05:00
htslib
httpie
hub
hunspell
hwloc	Hwloc add update 2.0.2 (#9244)	2018-09-14 10:48:38 -07:00
hybpiper
hydra
hydrogen
hypre	Update HYPRE with version 2.15.0. (#9443)	2018-10-08 08:58:02 +02:00
i3
ibmisc
iceauth
icedtea	Java updates: new versions, classpath, and JAVA_HOME (#8613)	2018-08-28 14:35:13 -04:00
icet
ico
icu4c	xerces-c: add variant for transcoder, rework config flags. (#9393)	2018-10-09 15:12:34 -07:00
id3lib
idba
igraph
igvtools
ilmbase
image-magick
imake
imp
impute2
infernal
inputproto
intel	Intel prefixes (#7469)	2018-08-29 21:09:34 -07:00
intel-daal	intel: add 2019.0 (#9328)	2018-09-24 21:27:43 -05:00
intel-gpu-tools
intel-ipp	intel: add 2019.0 (#9328)	2018-09-24 21:27:43 -05:00
intel-mkl	intel: add 2019.0 (#9328)	2018-09-24 21:27:43 -05:00
intel-mkl-dnn
intel-mpi	intel: add 2019.0 (#9328)	2018-09-24 21:27:43 -05:00
intel-parallel-studio	Intel parallel studio 2019 cluster edition (#9295)	2018-10-02 13:04:57 -05:00
intel-tbb	intel: add 2019.0 (#9328)	2018-09-24 21:27:43 -05:00
intel-xed
intltool
ior
iozone
iperf2
iperf3
ipopt	Make builtin flag handlers available in package scope (#8668)	2018-10-09 15:18:31 -07:00
isaac
isaac-server
isl
itstool
itsx
jackcess	Add MDB driver support to GDAL (#8614)	2018-08-29 12:35:56 -05:00
jags
jansson
jasper
jbigkit
jchronoss
jdk	jdk: added 10.0.2_13 (#9203)	2018-09-14 17:17:32 -07:00
jellyfish
jemalloc
jmol
jq
json-c
json-cwx
json-glib
jsoncpp
judy
julia
k8
kahip
kaiju
kaks-calculator
kaldi
kallisto
kbproto
kdiff3
kealib
kentutils
kibana	Added Kibana package, added Elasticsearch to 6.4.0 (#9239)	2018-09-14 10:50:20 -07:00
kim-api
kmergenie
kokkos	kokkos: bugfix for case wherein kokkos backends enabled in spack but not parsed correctly (#9396)	2018-10-01 17:36:55 -06:00
kraken
krb5
krims
kripke
kvasir-mpl
kvtree
laghos	Laghos: add version 1.1 (#9389)	2018-09-30 05:38:52 -06:00
lammps	lammps: add v20180822 (#9081)	2018-08-23 12:17:27 -05:00
last
latte
launchmon
lazyten
lbann
lbxproxy
lcals
lcms
ldc
ldc-bootstrap
legion
leveldb	leveldb: Fix header installation (#9069)	2018-08-22 09:46:11 -05:00
lftp
libaec
libaio
libapplewm
libarchive
libassuan
libatomic-ops
libbeagle
libbeato
libbsd
libbson
libcanberra
libcap
libceed
libcerf
libcheck
libcint	libcint: New version 3.0.12 (#9003)	2018-08-16 15:59:26 -05:00
libcircle
libconfig
libcroco
libctl
libdivsufsort
libdmx
libdrm
libdwarf
libedit
libelf
libemos
libepoxy	libepoxy: fix build (#9508)	2018-10-12 09:34:09 +02:00
libev
libevent
libevpath
libfabric	libfabric: Add develop version option. (#9074)	2018-08-22 14:21:30 -05:00
libffi	Build Python 3.7 with external libffi. (#9245)	2018-09-14 17:07:13 -07:00
libffs
libfontenc
libfs
libgcrypt
libgd
libgeotiff
libgit2
libgpg-error
libgpuarray
libgridxc
libgtextutils
libharu
libhio	libhio: add patch for 1.4.1.2 release (#9270)	2018-09-18 17:26:34 -06:00
libiberty	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
libice
libiconv	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
libint
libjpeg
libjpeg-turbo
libksba
liblbxutil
liblockfile
libmatheval	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
libmaxminddb
libmesh	libMesh: New variant and updated recent versions. (#9186)	2018-09-07 21:13:34 -07:00
libmng
libmongoc	libmongoc: Fix build (#9012)	2018-08-17 08:22:30 -05:00
libmonitor
libnbc
libnl
libnova
libogg
liboldx
libpcap
libpciaccess
libpfm4	libpfm4: add version and compiler flags (#9291)	2018-09-28 10:36:27 -07:00
libpipeline
libpng	libpng package: add version (#9142)	2018-08-31 10:26:13 -07:00
libpsl
libpthread-stubs
libquo	libquo: Packaging updates. (#9076)	2018-08-22 23:17:15 -05:00
librom
libsharp	libsharp: new package (#9530)	2018-10-16 11:24:42 -07:00
libshm
libsigcpp	libsigcpp: add a real homepage (#9282)	2018-09-28 14:48:31 -05:00
libsigsegv	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
libsm
libsodium
libspatialindex
libsplash
libssh
libssh2
libsvm
libszip
libtermkey
libtiff
libtool	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
libunistring	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
libunwind	libunwind: add version 1.3-rc1 and variant xz (#8989)	2018-08-17 08:22:04 -05:00
libuuid
libuv
libvorbis
libvterm
libwebsockets
libwindowswm
libx11
libxau
libxaw
libxaw3d
libxc
libxcb
libxcomposite
libxcursor
libxdamage
libxdmcp
libxevie
libxext
libxfixes
libxfont
libxfont2
libxfontcache
libxft
libxi
libxinerama
libxkbcommon
libxkbfile
libxkbui
libxml2
libxmu
libxp
libxpm
libxpresent
libxprintapputil
libxprintutil
libxrandr
libxrender
libxres
libxscrnsaver
libxshmfence
libxslt
libxsmm
libxstream
libxt
libxtrap
libxtst
libxv
libxvmc
libxxf86dga
libxxf86misc
libxxf86vm
libyogrt
libzip
lighttpd	lighttpd: install to bin vs sbin (#9337)	2018-09-28 18:38:51 -07:00
likwid
linkphase3
linux-headers
listres
llvm	Added llvm 7.0.0 (#9296)	2018-09-20 17:21:42 +02:00
llvm-openmp-ompt
lmdb
lmod
lndir
log4cplus
log4cxx
loki
lordec
lrslib
lrzip
lsof
ltrace
lua
lua-bitlib
lua-jit
lua-lpeg
lua-luafilesystem
lua-luaposix
lua-mpack
luit
lulesh
lumpy-sv
lwgrp
lwm2
lz4
lzma
lzo
m4	Fix missing dependencies and glibc build failures (#9106)	2018-10-10 14:17:12 +02:00
macsio	[WIP] Release 2.0 of the ECP Proxy Apps suite (#9368)	2018-10-02 16:35:41 -06:00
mad-numdiff
mafft
magics
magma	Magma: add version 2.4.0 (#9478)	2018-10-10 19:14:31 -07:00
makedepend
mallocmc
man-db
manta
maq
mariadb
masa
masurca
matio
matlab	matlab: new version (#9427)	2018-10-09 16:58:52 -07:00
maven
maverick
mawk
mbedtls
mc
mcl
mdtest
med
meep
mefit
megahit
memaxes
meme
memkind
meraculous
mercurial
mesa	new xdot.py package and necessary updates to GUI libs (#9179)	2018-10-10 19:07:51 +02:00
mesa-glu
meshkit
meson
mesquite
metabat
metaphysicl
metis
mfem
microbiomeutil
minced
mindthegap
miniaero
miniamr	[WIP] Release 2.0 of the ECP Proxy Apps suite (#9368)	2018-10-02 16:35:41 -06:00
miniasm
miniconda2
miniconda3
minife
minighost
minigmg
minimap2
minimd
miniqmc	[WIP] Release 2.0 of the ECP Proxy Apps suite (#9368)	2018-10-02 16:35:41 -06:00
minisign
minismac2d
minitri
minivite	miniVite: new package (#9348)	2018-09-26 19:48:34 -06:00
minixyce
minuit
mira
mirdeep2
mitofates
mitos
mkfontdir
mkfontscale
mlhka
moab	Add important variants to MOAB and Geant4 (#9409)	2018-10-09 17:05:49 -07:00
modern-wheel
mofem-cephas
mofem-fracture-module
mofem-minimal-surface-equation
mofem-users-modules
molcas
mono
mosh
mothur
motif
motioncor2	motioncor2 - added version 1.1.0 and removed old, unlisted versions (#9229)	2018-09-14 13:57:22 -07:00
mount-point-attributes
mozjs
mpark-variant
mpc	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
mpe2
mpest
mpfr	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
mpibash
mpiblast
mpich	Fix missing dependencies and glibc build failures (#9106)	2018-10-10 14:17:12 +02:00
mpifileutils	mpifileutils: add v0.8 (#9152)	2018-09-03 20:34:07 -05:00
mpilander
mpileaks
mpip
mpir
mpix-launch-swift
mrbayes
mrnet
mrtrix3
mscgen
msgpack-c	msgpack-c, snappy: explicitly depend on googletest (#9167)	2018-09-03 20:25:17 -05:00
mshadow
multitail
multiverso
mummer
mumps
munge
muparser
muscle
muse
muster
mvapich2	Fix missing dependencies and glibc build failures (#9106)	2018-10-10 14:17:12 +02:00
mxml
mxnet	mxnet: added 1.3.0 (#9236)	2018-09-14 11:01:30 -07:00
nag
nalu	Build Nalu-Wind and Trilinos statically on Darwin (#9522)	2018-10-15 11:03:11 -07:00
nalu-wind	Build Nalu-Wind and Trilinos statically on Darwin (#9522)	2018-10-15 11:03:11 -07:00
namd	Charmpp: rename charm to charmpp according to ++ conventions (#9216)	2018-09-14 17:01:07 -07:00
nano
nanoflann
nanopb
nasm
nauty
ncbi-magicblast
ncbi-rmblastn
ncbi-toolkit
nccl
nccmp
ncdu	ncdu: add new versions (#9477)	2018-10-10 19:15:33 -07:00
ncftp
ncl
nco
ncurses	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
ncview
ndiff
nek5000
nekbone	fix for issue #8845 (#8988)	2018-08-16 13:22:44 -06:00
nekcem
nektar
neovim
nest	codes, dia, nest: fix pkg-config dependency (#9498)	2018-10-12 09:57:44 +02:00
netcdf
netcdf-cxx
netcdf-cxx4
netcdf-fortran
netgauge
netgen
netlib-lapack	Update compile flags for netlib-lapack when building with the XL compiler. (#9318)	2018-10-10 14:16:50 -07:00
netlib-scalapack
netlib-xblas
nettle	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
neuron
nextflow
nfft
nghttp2
nginx
ngmlr
ninja
ninja-fortran
nlohmann-json	Ease nlohmann-json conflict with gcc 4.8 (#9506)	2018-10-12 09:45:54 +02:00
nlopt	nlopt: Only support release>=2.5.0, since earlier release tarballs were actually AutoTools, not CMake. (#9110)	2018-09-03 20:56:48 -05:00
nmap
nnvm
node-js
notmuch
npb
npm
npth
nspr
numactl
numdiff
nut
nvptx-tools	nvptx-tools: add new package (#9378)	2018-10-01 16:55:41 -05:00
nwchem	NWChem 6.8.1 (#9140)	2018-09-03 20:36:49 -05:00
ocaml
occa
oce
oclint
oclock
octave	Java updates: new versions, classpath, and JAVA_HOME (#8613)	2018-08-28 14:35:13 -04:00
octave-optim
octave-splines
octave-struct
octopus
of-adios-write
of-precice
omega-h	omega-h: fix dependencies (#9552)	2018-10-17 13:30:19 -05:00
ompss
ompt-openmp
oniguruma
ont-albacore
opa-psm2
opam
opari2	Update scorep and friends (#9495)	2018-10-12 18:51:52 +02:00
openbabel
openblas	openblas: patch experimental USE_TLS makefile option for 0.3.3 (#9474)	2018-10-10 18:58:47 -07:00
opencoarrays	OpenCoarrays: update v2.2.0 (#9215)	2018-09-14 16:59:19 -07:00
opencv	add opencv@3.4.3 (#9213)	2018-09-14 17:05:05 -07:00
openexr
openfast
openfoam-com	patch for OF.com@18.06 to correctly find KAHIP (#8982)	2018-08-26 19:44:06 -05:00
openfoam-org	install_tree: symlink handling and add 'ignore' option (#9019)	2018-08-17 22:08:38 -04:00
openfst
opengl
openglu
openjpeg
openmc	openmc: version bump (#7974)	2018-10-03 09:12:14 -06:00
openmpi	Added legacylaunchers variant to openmpi (#9336)	2018-09-27 19:29:15 -07:00
opennurbs
openpmd-api	Catch2: 2.3.0+ (#9300)	2018-09-20 15:55:18 +02:00
openscenegraph
openslide
openspeedshop	Update openspeedshop and cbtf version numbers (#9150)	2018-09-03 20:35:25 -05:00
openspeedshop-utils	Update openspeedshop and cbtf version numbers (#9150)	2018-09-03 20:35:25 -05:00
openssh
openssl	Fix missing dependencies and glibc build failures (#9106)	2018-10-10 14:17:12 +02:00
opium
optional-lite	Adds a package for optional-lite header-only library (#9117)	2018-08-29 18:14:59 +02:00
opus
orfm
orthofinder
orthomcl
osu-micro-benchmarks
otf
otf2
p4est	patching p4est to select the proper openmp lib (#9381)	2018-10-01 22:43:40 +02:00
p7zip
pacbio-daligner
pacbio-damasker
pacbio-dazz-db
pacbio-dextractor
pacvim	Pacvim new (#9273)	2018-10-05 12:07:22 -05:00
pagit
pagmo
paml	paml: remove old version, added 4.9h (#9360)	2018-09-26 19:03:35 -07:00
panda
pandaseq
pango
pangomm
papi
papyrus
paradiseo
parallel	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
parallel-netcdf
paraver
paraview	ParaView: add versions (#9428)	2018-10-03 19:34:38 -07:00
parmetis
parmgridgen
parquet
parsimonator
parsplice
partitionfinder
patch	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
patchelf
pathfinder
pax-utils
pbbam
pbmpi
pcma
pcre
pcre2
pdf2svg
pdftk
pdsh
pdt
pegtl
pennant
percept
perl	Added perl 5.28 (#9379)	2018-10-02 15:48:28 -07:00
perl-algorithm-diff
perl-app-cmd
perl-array-utils
perl-b-hooks-endofscope
perl-bio-perl
perl-bit-vector
perl-cairo
perl-capture-tiny
perl-carp-clan
perl-cgi	perl-cgi: new package starting at 4.37 (#9339)	2018-09-28 13:53:40 -05:00
perl-class-data-inheritable
perl-class-inspector
perl-class-load
perl-class-load-xs
perl-compress-raw-bzip2
perl-compress-raw-zlib
perl-contextual-return
perl-cpan-meta-check
perl-data-optlist
perl-data-stag
perl-dbd-mysql
perl-dbd-sqlite	perl-dbd-sqlite: new package starting at 1.56 (#9338)	2018-09-28 14:08:14 -05:00
perl-dbfile
perl-dbi
perl-devel-cycle
perl-devel-globaldestruction
perl-devel-overloadinfo
perl-devel-stacktrace
perl-digest-md5
perl-dist-checkconflicts
perl-encode-locale
perl-eval-closure
perl-exception-class
perl-exporter-tiny
perl-extutils-depends
perl-extutils-makemaker
perl-extutils-pkgconfig
perl-file-copy-recursive
perl-file-listing
perl-file-pushd
perl-file-sharedir-install
perl-file-slurp-tiny
perl-file-slurper
perl-file-which
perl-font-ttf
perl-gd
perl-gd-graph
perl-gd-text
perl-gdgraph-histogram	perl-gdgraph-histogram: new package (#9250)	2018-09-14 15:50:18 -07:00
perl-graph
perl-graph-readwrite
perl-html-parser
perl-html-tagset
perl-http-cookies
perl-http-daemon
perl-http-date
perl-http-message
perl-http-negotiate
perl-inline
perl-inline-c
perl-intervaltree
perl-io-compress
perl-io-html
perl-io-sessiondata
perl-io-socket-ssl
perl-io-string
perl-json
perl-libwww-perl
perl-list-moreutils
perl-log-log4perl
perl-lwp
perl-lwp-mediatypes
perl-lwp-protocol-https
perl-math-cdf
perl-math-cephes
perl-math-matrixreal
perl-module-build	perl-module-build new version (#9404)	2018-10-08 09:12:13 +02:00
perl-module-implementation
perl-module-runtime
perl-module-runtime-conflicts
perl-moose
perl-mozilla-ca
perl-mro-compat
perl-namespace-clean
perl-net-http
perl-net-scp-expect
perl-net-ssleay
perl-package-deprecationmanager
perl-package-stash
perl-package-stash-xs
perl-padwalker
perl-parallel-forkmanager
perl-params-util
perl-parse-recdescent
perl-pdf-api2
perl-pegex
perl-perl4-corelibs	perl-perl4-corelibs: new package (#9459)	2018-10-09 09:17:21 -05:00
perl-perl6-slurp
perl-perlio-gzip
perl-perlio-utf8-strict
perl-scalar-util-numeric	perl-scalar-util-numeric: new package (#9466)	2018-10-10 12:35:37 -05:00
perl-soap-lite
perl-star-fusion	perl-star-fusion package: update latest version (#9104)	2018-08-28 13:22:18 -04:00
perl-statistics-descriptive
perl-statistics-pca
perl-sub-exporter
perl-sub-exporter-progressive
perl-sub-identify
perl-sub-install
perl-sub-name
perl-sub-uplevel
perl-svg
perl-swissknife
perl-task-weaken
perl-term-readkey
perl-test-cleannamespaces
perl-test-deep
perl-test-differences
perl-test-exception
perl-test-fatal
perl-test-memory-cycle
perl-test-most
perl-test-needs
perl-test-requires
perl-test-requiresinternet
perl-test-warn
perl-test-warnings
perl-text-csv
perl-text-diff
perl-text-simpletable
perl-text-soundex
perl-text-unidecode
perl-time-hires
perl-time-piece
perl-try-tiny
perl-uri
perl-uri-escape
perl-version
perl-want
perl-www-robotrules
perl-xml-parser
perl-xml-parser-lite
perl-xml-simple
perl-yaml-libyaml
petsc	petsc: add petsc-3.10.2 (#9467)	2018-10-09 13:14:41 -05:00
pexsi
pfft
pflotran	pflotran: switch to parallel build (#9554)	2018-10-17 09:57:20 -05:00
pfunit
pgdspider
pgi
pgmath
phantompeakqualtools
phast
phasta
phist
phylip
picard
picsar	PICSAR: new package (#9411)	2018-10-02 16:04:49 -06:00
picsarlite	PICSARlite: actually builds PICSARlite now instead of PICSAR (#9410)	2018-10-02 15:46:31 -06:00
pidx
pigz
pilon
pindel
piranha
pism
pixman
pkg-config
pkgconf
planck-likelihood
plasma
platypus
plink
plplot
plumed	plumed: updating plumed to latest version (#9227)	2018-09-14 17:13:22 -07:00
pmgr-collective
pmix	pmix package: add new versions (#9532)	2018-10-15 18:21:02 -07:00
pnfft
pngwriter
pnmpi
poamsa
pocl	Update the pocl package (#9090)	2018-08-24 12:26:17 -05:00
polymake
poppler
poppler-data
porta
portage
portcullis	portcullis: new package starting at 1.1.2 (#9218)	2018-09-14 15:55:58 -07:00
postgresql
ppl
pplacer	New package: pplacer (#9112)	2018-10-08 16:02:12 -05:00
prank
precice
presentproto
preseq
price
primer3
prinseq-lite
printproto
prng
probconsrna
prodigal
proj
protobuf
proxymngr
pruners-ninja
ps-lite
psi4
pslib
psm
psmc
pstreams
pugixml
pumi
pv
pvm
pxz
py-3to2
py-4suite-xml
py-abipy
py-adios
py-affine
py-alabaster
py-apache-libcloud
py-apipkg
py-appdirs
py-appnope
py-apscheduler
py-argcomplete
py-argparse
py-ase
py-asn1crypto
py-astroid
py-astropy
py-atomicwrites	Update to latest version of pytest and dependencies (#9087)	2018-08-25 14:12:46 -05:00
py-attrs
py-autopep8
py-avro
py-avro-json-serializer
py-babel
py-backcall
py-backports-abc
py-backports-functools-lru-cache
py-backports-shutil-get-terminal-size
py-backports-ssl-match-hostname
py-basemap
py-bcbio-gff
py-beautifulsoup4
py-binwalk
py-biom-format
py-biopython
py-bitarray
py-bitstring
py-bleach
py-blessings
py-bokeh
py-boltons
py-bottleneck	Added py-pandas@0.23.4 and py-bottleneck@1.2.1 (#9515)	2018-10-12 18:52:39 +02:00
py-breakseq2
py-brian
py-brian2
py-bsddb3
py-bx-python
py-cartopy
py-cclib
py-cdat-lite
py-cdo
py-certifi
py-cffi
py-chardet
py-checkm-genome
py-cheetah
py-click
py-cligj
py-cloudpickle
py-cogent	Feature/py pycogent New-Version (#9095)	2018-09-04 14:34:18 -05:00
py-colorama
py-colormath	py-colormath: new version, requires newer networkx (#9237)	2018-09-14 10:35:45 -07:00
py-configparser
py-counter
py-coverage
py-cpuinfo
py-crispresso
py-cryptography
py-csvkit
py-current
py-cutadapt
py-cvxopt
py-cycler
py-cython
py-dask
py-dateutil
py-dbf
py-decorator	py-decorator: new version (#9240)	2018-09-14 15:51:43 -07:00
py-deeptools
py-dendropy
py-dill
py-discover
py-dlcpar
py-docopt
py-docutils
py-doxypy
py-doxypypy
py-dryscrape
py-dxchange
py-dxfile
py-easybuild-easyblocks
py-easybuild-easyconfigs
py-easybuild-framework
py-edffile
py-editdistance
py-elasticsearch
py-elephant
py-emcee
py-entrypoints
py-enum34
py-epydoc
py-espresso	py-espresso: apply patch to v4.0.0 only (#9196)	2018-09-13 10:00:21 +00:00
py-espressopp
py-et-xmlfile
py-eventlet
py-execnet
py-fastaindex
py-fasteners
py-faststructure
py-filelock	py-filelock: new package (#9136)	2018-08-31 11:21:55 -07:00
py-fiscalyear
py-flake8	py-flake8: enum34 not required for python 3.4 and up (#9415)	2018-10-03 19:33:22 -07:00
py-flake8-polyfill	py-flake8-polyfill: removing unnecessary build_args (#9284)	2018-09-28 14:49:45 -05:00
py-flask
py-flask-compress
py-flask-socketio
py-flexx
py-fn
py-fparser
py-funcsigs	Update to latest version of pytest and dependencies (#9087)	2018-08-25 14:12:46 -05:00
py-functools32
py-future
py-futures
py-gdbgui
py-genders
py-genshi
py-gevent
py-git2
py-git-review
py-gnuplot
py-goatools
py-gpaw
py-greenlet
py-griddataformats
py-guidata
py-guiqwt
py-h5py	py-h5py: add version 2.8.0 (#9231)	2018-09-14 15:56:44 -07:00
py-html2text
py-html5lib
py-htseq
py-httpbin
py-hypothesis
py-idna
py-igraph
py-illumina-utils
py-imageio
py-imagesize
py-iminuit
py-importlib
py-ipaddress
py-ipdb
py-ipykernel
py-ipython
py-ipython-genutils
py-ipywidgets
py-isort
py-itsdangerous
py-jdcal
py-jedi
py-jinja2
py-joblib
py-jprops	py-jprops: new package @ 1.0.2 (#9417)	2018-10-05 10:58:49 -05:00
py-jpype
py-jsonschema
py-junit-xml
py-jupyter-client
py-jupyter-console
py-jupyter-core
py-jupyter-notebook
py-keras
py-kiwisolver
py-lark-parser
py-latexcodec
py-lazy
py-lazy-object-proxy
py-lazy-property
py-lazyarray
py-libconf
py-libensemble	Update py-libensemble package to v0.3.0 (#9210)	2018-09-14 17:15:31 -07:00
py-line-profiler
py-linecache2
py-lit
py-llvmlite
py-lmfit
py-localcider
py-locket
py-lockfile
py-logilab-common
py-lrudict
py-lxml
py-lzstring
py-macholib
py-machotools
py-macs2
py-maestrowf	py-maestrowf: Addition of new releases. (#9135)	2018-09-04 14:33:55 -05:00
py-mako
py-mappy
py-markdown	py-markdown: fix url and hashes (#9235)	2018-09-14 15:51:20 -07:00
py-markupsafe
py-matplotlib	added py-matplotlib version 3.0.0 (#9335)	2018-10-02 15:35:06 -07:00
py-mccabe
py-mdanalysis
py-meep
py-memory-profiler
py-methylcode
py-mg-rast-tools
py-misopy
py-mistune
py-mock	update py-mock dependencies based on requirements.txt (#9496)	2018-10-15 18:27:13 -07:00
py-moltemplate
py-mongo
py-monotonic
py-monty
py-more-itertools	Update to latest version of pytest and dependencies (#9087)	2018-08-25 14:12:46 -05:00
py-mpi4py
py-mpmath
py-multiprocess
py-multiqc	py-multiqc: needs newer py-spectra (#9226)	2018-09-14 15:52:29 -07:00
py-mx
py-mxnet
py-myhdl
py-mysqldb1
py-natsort
py-nbconvert
py-nbformat
py-neo
py-nestle
py-netcdf4
py-netifaces
py-networkx	py-networkx: new version (#9241)	2018-09-14 15:52:02 -07:00
py-nose
py-nosexcover
py-numba
py-numexpr
py-numexpr3
py-numpy	Update to latest version of pytest and dependencies (#9087)	2018-08-25 14:12:46 -05:00
py-numpydoc
py-olefile
py-ont-fast5-api
py-openpmd-validator
py-openpyxl
py-openslide-python
py-opentuner
py-ordereddict
py-oset
py-owslib
py-packaging
py-palettable
py-pandas	Added py-pandas@0.23.4 and py-bottleneck@1.2.1 (#9515)	2018-10-12 18:52:39 +02:00
py-paramiko
py-partd
py-pathlib2	Update to latest version of pytest and dependencies (#9087)	2018-08-25 14:12:46 -05:00
py-pathos
py-pathspec
py-patsy
py-pbr
py-pep8-naming
py-perf
py-performance
py-periodictable
py-petsc4py
py-pexpect
py-phonopy
py-pickleshare
py-picrust	Feature/py picrust (#9184)	2018-09-14 17:24:17 -07:00
py-pil
py-pillow
py-pip
py-pipits
py-pkgconfig
py-plotly
py-pluggy	Update to latest version of pytest and dependencies (#9087)	2018-08-25 14:12:46 -05:00
py-ply
py-pmw
py-poster
py-pox
py-ppft
py-prettytable
py-progress	py-progress: new package. (#9420)	2018-10-03 17:12:30 +02:00
py-proj
py-projectq
py-prompt-toolkit
py-protobuf
py-psutil
py-psyclone
py-ptyprocess
py-pudb
py-py	Update to latest version of pytest and dependencies (#9087)	2018-08-25 14:12:46 -05:00
py-py2bit
py-py2cairo
py-py2neo
py-py4j	py-py4j: add version 0.10.6 (#9418)	2018-10-04 15:32:54 -05:00
py-pyani
py-pyasn1
py-pybigwig
py-pybind11	py-pybind11: add version 2.2.4 (#9355)	2018-09-26 19:19:46 -07:00
py-pybtex
py-pybtex-docutils
py-pycairo	new xdot.py package and necessary updates to GUI libs (#9179)	2018-10-10 19:07:51 +02:00
py-pychecker
py-pycodestyle
py-pycparser
py-pycrypto
py-pycurl
py-pydatalog
py-pydispatcher
py-pydot
py-pyelftools
py-pyepsg
py-pyfasta
py-pyfftw
py-pyflakes
py-pygdbmi
py-pygments
py-pygobject	new xdot.py package and necessary updates to GUI libs (#9179)	2018-10-10 19:07:51 +02:00
py-pygpu
py-pygtk	new xdot.py package and necessary updates to GUI libs (#9179)	2018-10-10 19:07:51 +02:00
py-pylint
py-pymatgen
py-pyminifier
py-pymol
py-pympler
py-pymysql	py-pymysql: new package (#9122)	2018-09-03 20:50:39 -05:00
py-pynn
py-pypar
py-pyparsing
py-pypeflow
py-pyprof2html
py-pyqi
py-pyqt
py-pyrad
py-pysam
py-pyscaf
py-pyserial
py-pyshp
py-pyside
py-pysocks
py-pyspark	py-pyspark: new package (#9419)	2018-10-08 09:03:31 +02:00
py-pysqlite
py-pytables
py-pytest	Update to latest version of pytest and dependencies (#9087)	2018-08-25 14:12:46 -05:00
py-pytest-cov
py-pytest-flake8
py-pytest-httpbin
py-pytest-mock
py-pytest-runner
py-pytest-xdist
py-python-daemon
py-python-engineio
py-python-gitlab
py-python-levenshtein
py-python-socketio
py-pythonqwt
py-pytorch
py-pytz
py-pyutilib
py-pywavelets
py-pyyaml	added version for kull support (#9141)	2018-09-03 20:36:15 -05:00
py-qtawesome
py-qtconsole
py-qtpy
py-quantities
py-quast
py-radical-utils
py-ranger
py-rasterio
py-readme-renderer
py-regex
py-reportlab
py-requests
py-requests-toolbelt
py-restview
py-rope
py-rpy2
py-rsa
py-rseqc
py-rtree
py-saga-python
py-scandir	Update to latest version of pytest and dependencies (#9087)	2018-08-25 14:12:46 -05:00
py-scientificpython
py-scikit-image
py-scikit-learn	py-scikit-learn: added version 0.20.0 (#9526)	2018-10-15 10:25:05 -07:00
py-scipy	Update to latest version of pytest and dependencies (#9087)	2018-08-25 14:12:46 -05:00
py-seaborn
py-setuptools	py-setuptools: add version 40.4.3 (#9534)	2018-10-16 11:03:03 -07:00
py-setuptools-git
py-setuptools-scm	Update to latest version of pytest and dependencies (#9087)	2018-08-25 14:12:46 -05:00
py-sfepy
py-sh
py-shapely
py-shiboken
py-simplegeneric
py-simplejson
py-singledispatch
py-sip
py-six
py-slepc4py
py-slurm-pipeline
py-sncosmo
py-snowballstemmer
py-snuggs
py-spectra	py-spectra: new version (#9224)	2018-09-14 16:59:50 -07:00
py-spefile
py-spglib
py-sphinx
py-sphinx-bootstrap-theme
py-sphinx-rtd-theme
py-sphinxcontrib-bibtex
py-sphinxcontrib-programoutput
py-sphinxcontrib-websupport
py-spyder	py-spyder: update dependencies and fix build (#9207)	2018-10-12 10:57:32 -07:00
py-spykeutils
py-sqlalchemy
py-statsmodels
py-stevedore
py-storm
py-subprocess32
py-symengine
py-symfit
py-sympy
py-tabulate
py-tappy
py-terminado
py-testinfra
py-tetoolkit
py-theano
py-tifffile
py-toml
py-tomopy
py-toolz
py-tornado
py-tqdm
py-traceback2
py-traitlets
py-tuiview
py-twisted
py-typing
py-tzlocal
py-udunits
py-umi-tools
py-unittest2
py-unittest2py3k
py-urllib3
py-urwid
py-vcversioner
py-virtualenv
py-virtualenv-clone
py-virtualenvwrapper
py-vsc-base
py-vsc-install
py-wcsaxes
py-wcwidth
py-webkit-server
py-weblogo
py-werkzeug
py-wheel
py-widgetsnbextension
py-wrapt
py-xarray
py-xattr
py-xdot	new xdot.py package and necessary updates to GUI libs (#9179)	2018-10-10 19:07:51 +02:00
py-xlrd
py-xlsxwriter
py-xmlrunner
py-xopen
py-xpyb
py-xvfbwrapper
py-yamlreader
py-yapf
py-yt
py-ytopt	ytopt: new package (#9403)	2018-10-01 23:16:32 -07:00
py-zmq
py-zope-event
py-zope-interface
pythia6	New package: pythia6 (#9340)	2018-10-09 11:56:43 -07:00
python	python: add details on missing library to error message (#9332)	2018-10-03 19:46:14 -07:00
qbank
qbox
qhull
qmcpack	QMCPACK Spack Package Update (Summer 2018) (#9008)	2018-08-18 11:26:17 -05:00
qmd-progress
qorts
qrupdate
qt	qt: fix dbus builds (#9315)	2018-09-25 11:33:19 -05:00
qt-creator
qtgraph	qtgraph and cbtf-argonavis create proper library paths in modules (#8797)	2018-08-17 15:58:08 -07:00
qthreads
quantum-espresso
quinoa	Charmpp: rename charm to charmpp according to ++ conventions (#9216)	2018-09-14 17:01:07 -07:00
qwt
r
r-a4
r-a4base
r-a4classif
r-a4core
r-a4preproc
r-a4reporting
r-abadata
r-abaenrichment
r-abind
r-absseq
r-acde
r-acepack
r-acgh
r-acme
r-ada
r-adabag
r-ade4
r-adegenet
r-adsplit
r-aer
r-affxparser
r-affy
r-affycomp
r-affycompatible
r-affycontam
r-affycoretools
r-affydata
r-affyexpress
r-affyilm
r-affyio
r-affypdnn
r-affyplm
r-affyqcreport
r-affyrnadegradation
r-agdex
r-agilp
r-agimicrorna
r-aims
r-aldex2
r-allelicimbalance
r-alpine
r-als
r-alsace
r-altcdfenvs
r-amap
r-ampliqueso
r-analysispageserver
r-anaquin
r-aneufinder
r-aneufinderdata
r-animation	New package: r-animation (#9314)	2018-09-24 11:28:05 -07:00
r-annaffy
r-annotate	r-annotate: new version (#9061)	2018-08-22 09:45:11 -05:00
r-annotationdbi	r-annotationdbi : new version (#9040)	2018-08-21 14:15:17 -05:00
r-annotationfilter
r-annotationforge
r-annotationhub
r-ape
r-argparse
r-assertthat
r-backports
r-bamsignals
r-base64
r-base64enc
r-bbmisc
r-beanplot
r-bh
r-biasedurn
r-bindr
r-bindrcpp
r-biobase	r-biobase: new version (#9038)	2018-08-21 14:15:42 -05:00
r-biocgenerics	r-biocgenerics: new version (#9039)	2018-08-21 14:15:30 -05:00
r-biocinstaller
r-biocparallel	r-biocparallel: new link dependency added in last version (#9274)	2018-09-28 13:56:46 -05:00
r-biocstyle
r-biom-utils
r-biomart	r-biomart: new version; (#9058)	2018-09-03 21:03:47 -05:00
r-biomformat
r-biostrings	r-biostrings: new version (#9048)	2018-08-22 12:21:43 +02:00
r-biovizbase
r-bit
r-bit64
r-bitops
r-blob
r-bookdown
r-boot
r-brew
r-broom
r-bsgenome
r-bumphunter
r-c50
r-callr
r-car
r-caret
r-category
r-catools
r-cdcfluview
r-cellranger
r-checkmate
r-checkpoint
r-chemometrics	Tanim (#9158)	2018-09-07 16:00:52 -05:00
r-chron
r-circlize
r-class
r-classint
r-cli
r-clipr
r-cluster
r-clusterprofiler
r-cner
r-coda
r-codetools
r-coin
r-colorspace
r-complexheatmap
r-corpcor
r-corrplot
r-covr
r-cowplot
r-crayon
r-crosstalk
r-ctc
r-cubature
r-cubist
r-curl
r-data-table
r-dbi
r-dbplyr
r-delayedarray	r-delayedarray: new version (#9053)	2018-08-22 09:39:52 -05:00
r-deldir
r-dendextend
r-deoptim
r-deoptimr
r-deseq
r-deseq2	r-deseq2: new version (#9062)	2018-09-03 21:03:08 -05:00
r-desolve
r-devtools
r-diagrammer
r-dicekriging
r-dichromat
r-diffusionmap
r-digest
r-diptest
r-dirichletmultinomial
r-dnacopy
r-do-db
r-domc
r-doparallel
r-dorng
r-dose
r-downloader
r-dplyr	new versions of r-dplyr,r-plogr,r-rlang (#9313)	2018-09-24 11:22:04 -07:00
r-dt
r-dtw
r-dygraphs
r-e1071
r-edger	r-edger: add r-rcpp dependency (#9457)	2018-10-08 16:25:31 -05:00
r-ellipse
r-ensembldb
r-ergm
r-evaluate
r-expm
r-factoextra
r-factominer
r-fastcluster
r-fastmatch
r-ff
r-fftwtools
r-fgsea
r-filehash
r-findpython
r-fit-models
r-flashclust
r-flexclust
r-flexmix
r-fnn	Tanim (#9158)	2018-09-07 16:00:52 -05:00
r-forcats
r-foreach
r-forecast
r-foreign
r-formatr
r-formula
r-fpc
r-fracdiff
r-futile-logger
r-futile-options
r-gbm
r-gcrma
r-gdata
r-gdsfmt
r-geiger
r-genefilter	r-genefilter: new version (#9063)	2018-08-22 09:45:56 -05:00
r-genelendatabase
r-geneplotter	r-geneplotter: new version (#9060)	2018-08-22 09:44:48 -05:00
r-genie3
r-genomeinfodb	r-genomeinfodb: new version (#9051)	2018-08-22 09:38:28 -05:00
r-genomeinfodbdata	r-genomeinfodbdata: new version (#9050)	2018-08-22 09:37:56 -05:00
r-genomicalignments	r-genomicalignments: new version (#9055)	2018-09-03 21:04:22 -05:00
r-genomicfeatures	r-genomicfeatures: new version (#9057)	2018-08-22 09:41:38 -05:00
r-genomicranges	r-genomicranges: new version (#9052)	2018-08-22 09:39:23 -05:00
r-geomorph
r-geoquery
r-geosphere
r-getopt
r-getoptlong
r-ggally
r-ggbio
r-ggdendro
r-ggjoy
r-ggmap
r-ggplot2
r-ggpubr
r-ggrepel
r-ggridges
r-ggsci
r-ggvis
r-gistr
r-git2r
r-glimma
r-glmnet
r-globaloptions
r-glue
r-gmodels
r-gmp
r-go-db
r-googlevis
r-goplot
r-gosemsim
r-goseq	r-goseq: new package (#8939)	2018-08-26 19:45:23 -05:00
r-gostats
r-gplots
r-graph
r-gridbase
r-gridextra
r-gseabase
r-gss
r-gsubfn
r-gtable
r-gtools
r-gtrellis
r-gviz
r-haven
r-hexbin
r-highr
r-hmisc
r-hms
r-htmltable
r-htmltools
r-htmlwidgets
r-httpuv
r-httr
r-hwriter
r-hypergraph
r-ica
r-igraph
r-illuminaio
r-impute
r-influencer
r-inline
r-interactivedisplaybase
r-ipred
r-iranges	r-iranges: new version (#9041)	2018-08-21 15:02:52 -05:00
r-irdisplay
r-irkernel
r-irlba
r-iso
r-iterators
r-janitor
r-jaspar2018
r-jomo
r-jpeg
r-jsonlite
r-kegg-db
r-kegggraph
r-keggrest
r-kernlab
r-kernsmooth
r-kknn
r-knitr
r-ks	Tanim (#9158)	2018-09-07 16:00:52 -05:00
r-labeling
r-lambda-r
r-laplacesdemon
r-lars	Tanim (#9158)	2018-09-07 16:00:52 -05:00
r-lattice
r-latticeextra
r-lava
r-lazyeval
r-leaflet
r-leaps
r-learnbayes
r-lhs
r-limma
r-lme4
r-lmtest
r-locfit
r-log4r
r-lpsolve
r-lsei
r-lubridate
r-magic
r-magrittr
r-makecdfenv
r-maldiquant
r-mapproj
r-maps
r-maptools
r-markdown
r-mass
r-matr
r-matrix
r-matrixmodels
r-matrixstats
r-mclust
r-mcmcglmm
r-mco
r-mda
r-memoise
r-mergemaid
r-methodss3
r-mgcv
r-mgraster
r-mice
r-mime
r-minfi
r-minqa
r-misc3d	r-misc3d: add a real homepage (#9283)	2018-09-28 13:54:50 -05:00
r-mitml
r-mixtools
r-mlbench
r-mlinterfaces
r-mlr
r-mlrmbo
r-mmwrweek
r-mnormt
r-modelmetrics
r-modelr
r-modeltools
r-mpm
r-msnbase
r-multcomp
r-multicool	Tanim (#9158)	2018-09-07 16:00:52 -05:00
r-multtest
r-munsell
r-mvtnorm
r-mzid
r-mzr
r-nanotime
r-ncbit
r-ncdf4
r-network
r-networkd3
r-nlme
r-nloptr	r-nloptr: Explicit depends_on(nlopt). Previously there was a hidden d… (#9176)	2018-09-14 08:11:16 -05:00
r-nmf
r-nnet
r-nnls
r-nor1mix
r-np
r-numderiv
r-oligoclasses
r-oo
r-openssl
r-org-hs-eg-db
r-organismdbi
r-packrat
r-pacman
r-pamr
r-pan
r-parallelmap
r-paramhelpers
r-party
r-partykit
r-pathview
r-pbapply
r-pbdzmq
r-pbkrtest
r-pcamethods
r-pcapp	Tanim (#9158)	2018-09-07 16:00:52 -05:00
r-permute
r-pfam-db
r-phangorn
r-phantompeakqualtools
r-phyloseq
r-picante
r-pkgconfig
r-pkgmaker
r-plogr	new versions of r-dplyr,r-plogr,r-rlang (#9313)	2018-09-24 11:22:04 -07:00
r-plot3d
r-plotly
r-plotrix
r-pls
r-plyr
r-pmcmr
r-png
r-powerlaw
r-prabclus
r-praise
r-preprocesscore
r-prettyunits
r-processx	new package: r-processx (#9342)	2018-09-26 19:12:06 -07:00
r-prodlim
r-progress
r-protgenerics
r-proto	r-proto: added 1.0.0 (#9456)	2018-10-09 08:44:17 -05:00
r-proxy
r-pryr
r-ps	new package: r-ps (#9341)	2018-09-26 19:08:55 -07:00
r-psych
r-ptw
r-purrr
r-quadprog
r-quantmod
r-quantreg
r-quantro
r-qvalue	r-qvalue: new version (#9059)	2018-08-22 09:44:21 -05:00
r-r6
r-randomforest
r-ranger
r-rappdirs
r-raster
r-rbgl
r-rbokeh
r-rcolorbrewer
r-rcpp
r-rcpparmadillo
r-rcppblaze
r-rcppcctz
r-rcppcnpy
r-rcppeigen
r-rcppprogress
r-rcurl
r-rda
r-readr
r-readxl	r-readxl: added 1.1.0 (#9454)	2018-10-08 15:40:45 -05:00
r-registry
r-rematch
r-reordercluster
r-reportingtools
r-repr
r-reprex
r-reshape
r-reshape2
r-rex
r-rgdal
r-rgenoud
r-rgeos
r-rgl
r-rgooglemaps
r-rgraphviz
r-rhdf5
r-rhtslib
r-rinside
r-rjags
r-rjava
r-rjson
r-rjsonio
r-rlang	new versions of r-dplyr,r-plogr,r-rlang (#9313)	2018-09-24 11:22:04 -07:00
r-rmarkdown
r-rminer
r-rmpfr
r-rmpi
r-rmysql
r-rngtools
r-robustbase
r-rocr
r-rodbc	added list URL for r-rodbc (#9460)	2018-10-08 16:25:52 -05:00
r-rots	r-rots: fix package type (#9344)	2018-09-28 13:11:09 -05:00
r-roxygen2
r-rpart
r-rpart-plot
r-rpostgresql
r-rprojroot
r-rsamtools	r-rsamtools: new version (#9049)	2018-08-22 09:37:03 -05:00
r-rsnns
r-rsolnp
r-rsqlite
r-rstan
r-rstudioapi
r-rtracklayer	r-rtracklayer: new version (#9056)	2018-08-22 09:43:25 -05:00
r-rtsne
r-rvcheck
r-rvest
r-rzmq
r-s4vectors	r-s4vectors: new version (#9043)	2018-08-21 14:14:05 -05:00
r-samr
r-sandwich
r-scales
r-scatterplot3d
r-sdmtools
r-segmented
r-selectr
r-seqinr
r-seqlogo
r-seurat
r-sf
r-sfsmisc
r-shape
r-shiny
r-shinydashboard
r-shortread
r-siggenes
r-simpleaffy
r-sm
r-smoof
r-sn
r-snow
r-snowfall
r-snprelate
r-som	Tanim (#9158)	2018-09-07 16:00:52 -05:00
r-somaticsignatures
r-sourcetools
r-sp
r-sparsem
r-spdep
r-speedglm
r-spem
r-splitstackshape
r-sqldf
r-squash
r-stanheaders
r-statmod
r-statnet-common
r-stringi
r-stringr
r-strucchange
r-subplex
r-summarizedexperiment	r-summarizedexperiment: new version (#9054)	2018-09-04 14:34:45 -05:00
r-survey
r-survival
r-sva
r-tarifx
r-tclust
r-tensora
r-testit
r-testthat
r-tfbstools
r-tfmpvalue
r-th-data
r-threejs
r-tibble
r-tidycensus
r-tidyr
r-tidyselect
r-tidyverse
r-tiff
r-tigris
r-timedate
r-tmixclust
r-topgo
r-trimcluster
r-truncnorm
r-trust
r-tseries
r-tsne
r-ttr
r-udunits2
r-units
r-utils
r-uuid
r-variantannotation
r-varselrf
r-vcd
r-vegan
r-vgam
r-vipor
r-viridis
r-viridislite
r-visnetwork
r-vsn
r-whisker
r-withr
r-xde
r-xgboost
r-xlconnect
r-xlconnectjars
r-xlsx
r-xlsxjars
r-xmapbridge
r-xml
r-xml2
r-xtable
r-xts
r-xvector	r-xvector: new version (#9045)	2018-08-21 14:13:39 -05:00
r-yaml
r-yapsa
r-yaqcaffy
r-yarn
r-zlibbioc	r-zlibbioc: new version (#9044)	2018-08-21 14:13:52 -05:00
r-zoo
racon
raft
ragel
raja
randfold
random123
randrproto
range-v3	range-v3 package (#9093)	2018-08-24 09:41:25 -05:00
rankstr
rapidjson
ravel
raxml	raxml: build all matching variants (#9377)	2018-10-02 09:20:47 -05:00
ray
rclone	new package: rclone (#9268)	2018-09-18 18:39:07 -07:00
rdma-core	update rdma-core package to specify rundir (#9370)	2018-10-10 18:51:19 -07:00
rdp-classifier
re2c
readfq
readline	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
recordproto
redset
redundans	redundans: replace incorrect hard-coded path for sspace-standard (#9483)	2018-10-15 12:43:02 -07:00
relion	added relion version 3 (beta) (#8872)	2018-08-16 10:51:58 -05:00
rempi
rename
rendercheck
renderproto
repeatmasker
resourceproto
revbayes
rgb
rhash
rlwrap
rmats	rmats: new package starting at 4.0.2 (#9243)	2018-09-14 14:54:26 -07:00
rmlab
rna-seqc
rngstreams
rockstar
root
rose
ross	ROSS package: fix build error and add v7.0.0 (#9128)	2018-08-29 13:13:50 -04:00
rr
rsbench
rsem
rstart
rsync
rtags
rtax
ruby
ruby-gnuplot
ruby-narray
ruby-ronn
ruby-rubyinline
ruby-svn2git
ruby-terminal-table
rust
rust-bindgen
sabre
sailfish
salmon	salmon: remove static link to libstdc++ (#9343)	2018-10-04 20:57:33 -05:00
sambamba
samblaster
samrai
samtools
sandbox
sas
satsuma2
savanna
saws
sbt
scala
scalasca
scalpel
scan-for-matches
scons
scorec-core
scorep	Update scorep and friends (#9495)	2018-10-12 18:51:52 +02:00
scotch
scr
screen	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
scripts
scrnsaverproto
sctk
sdl2
sdl2-image
sed	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
seqan
seqprep
seqtk
serf
sessreg
setxkbmap
sga
shapeit
shared-mime-info
shiny-server
shocklibs
shoremap
shortbred
shortstack
showfont
shuffile
sickle
siesta
signalp
signify
silo	Fix two dependencies with silo. (#9153)	2018-09-03 16:43:00 +02:00
simplemoc
simul
simulationio
singularity	singularity: new version	2018-08-31 08:47:24 -07:00
skilion-onedrive	Onedrive: a new package. (#9130)	2018-09-04 14:35:49 -05:00
sleef
slepc	petsc: add new versions 3.9.4 and 3.10.0 (#9319)	2018-09-24 23:57:38 -05:00
slurm	Added slurm 17.11 and 18.08 (#9345)	2018-09-27 13:34:41 -07:00
smalt
smproxy
snakemake
snap
snap-berkeley
snap-korf
snappy	msgpack-c, snappy: explicitly depend on googletest (#9167)	2018-09-03 20:25:17 -05:00
snbone
sniffles
snpeff
snphylo
snptest
soap2
soapdenovo2
soapdenovo-trans
soapindel
soapsnp
sofa-c
somatic-sniper
sortmerna
sosflow
sowing
sox
spades	Spades: add version 3.12 (#9286)	2018-10-02 17:24:39 -07:00
span-lite	Adds a package for span-lite header-only library (#9118)	2018-08-29 11:01:35 +02:00
spark	Java updates: new versions, classpath, and JAVA_HOME (#8613)	2018-08-28 14:35:13 -04:00
sparsehash
sparta
spdlog	Add newer versions of spdlog (#9290)	2018-09-20 17:53:15 +02:00
spectrum-mpi
speex
spglib
sph2pipe
spherepack
spindle
spot
sqlite	Build Python 3.7 with external libffi. (#9245)	2018-09-14 17:07:13 -07:00
sqlitebrowser
squid
sra-toolkit	sra-toolkit: new version and preserve symlinks (#9525)	2018-10-15 11:09:00 -07:00
ssht	ssht: new package (#9518)	2018-10-15 12:44:09 -07:00
sspace-longread
sspace-standard	sspace-standard: use Getopt::Std instead of getopts.pl (#9516)	2018-10-15 19:07:36 -07:00
sst-core	Added sst-core and variant for core to sst-macro. (#9380)	2018-10-10 11:02:18 -07:00
sst-dumpi
sst-macro	Added sst-core and variant for core to sst-macro. (#9380)	2018-10-10 11:02:18 -07:00
stacks
staden-io-lib
star	star - added latest versions with shasum (#9257)	2018-09-16 15:44:33 -05:00
star-ccm-plus
startup-notification
stat
stc	stc and turbine: fix depends_on(type) (#9537)	2018-10-16 13:27:23 -07:00
steps	steps: new package starting at 3.3 (#9173)	2018-09-11 14:43:15 +02:00
stow	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
strace
stream
strelka
stress
string-view-lite	Add string-view-lite package for header only library (#9125)	2018-08-29 06:54:20 +02:00
stringtie
structure
strumpack	STRUMPACK: new package (#9429)	2018-10-09 08:44:49 -05:00
sublime-text
subread
subversion
suite-sparse
sumaclust
sundials	SUNDIALS: add new versions (#9401)	2018-10-03 19:37:54 -07:00
superlu
superlu-dist	superlu-dist: fix v5.3.0 buid - its attempting to build internal blas (#9517)	2018-10-12 10:58:37 -05:00
superlu-mt
supernova
sw4lite	sw4lite: add v1.1 (#9289)	2018-09-19 13:30:28 -06:00
swap-assembler
swarm
swfft
swiftsim
swig
symengine
sympol
sz
tabix
talass	new package: TALASS (#9326)	2018-09-26 18:15:47 -07:00
talloc
tantan
tar	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
targetp
task
taskd
tasmanian	updated tasmanian package with v6.0, improved depend_on and conflicts information (#9438)	2018-10-11 11:25:20 -05:00
tassel
tau
tcl	Set libs property for tcl and tk (#9372)	2018-09-27 19:34:18 -07:00
tcl-itcl
tcl-tcllib
tcl-tclxml
tclap
tcoffee
tcptrace
tcsh
tealeaf
templight
templight-tools
tetgen
tethex
texinfo	Fix missing dependencies and glibc build failures (#9106)	2018-10-10 14:17:12 +02:00
texlive
the-platinum-searcher
the-silver-searcher
thornado-mini	Spackage for Thornado-mini (#9363)	2018-10-02 16:03:58 -06:00
thrift	Java updates: new versions, classpath, and JAVA_HOME (#8613)	2018-08-28 14:35:13 -04:00
thrust
tig
tinyxml
tinyxml2
tioga
tk	Set libs property for tcl and tk (#9372)	2018-09-27 19:34:18 -07:00
tldd	New package: tldd (#9434)	2018-10-09 09:15:42 -05:00
tmalign
tmhmm
tmux
tmuxinator
tophat
tppred
tracer	new package: TraceR (#9298)	2018-10-02 11:04:11 -07:00
transabyss
transdecoder
transposome
transset
trapproto
tree
treesub	treesub: new package starting at 0.2 (#9361)	2018-10-08 16:26:51 -05:00
trf
triangle
trilinos	Build Nalu-Wind and Trilinos statically on Darwin (#9522)	2018-10-15 11:03:11 -07:00
trimgalore
trimmomatic
trinity	trinity: full dependencies (#9064)	2018-09-04 14:35:06 -05:00
trnascan-se
turbine	stc and turbine: fix depends_on(type) (#9537)	2018-10-16 13:27:23 -07:00
turbomole
tut
twm
tycho2
typhon
typhonio
uberftp
ucx	new package versions: ucx, libhio, and hwloc (#9365)	2018-09-26 18:53:54 -07:00
udunits2
ufo-core
ufo-filters
umpire
unblur
uncrustify
unibilium
unison
units	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
unixodbc
unuran
unzip
usearch
util-linux
util-macros
uuid
valgrind	Valgrind: add ubsan and only64bit variants. (#9302)	2018-10-04 16:06:10 -07:00
vampirtrace
vardictjava
varscan
vc
vcftools
vcsh
vdt
vecgeom	VecGeom: add versions and cxxstd variant (#9303)	2018-10-04 16:11:28 -07:00
veclibfort
vegas2
veloc
velvet
verilator
verrou
videoproto
viennarna
viewres
vim	Vim: add version 8.1.0338 (#9155)	2018-09-01 08:12:14 -05:00
virtualgl
visit
vizglow
vmatch
voropp
votca-csg
votca-ctp
votca-tools
votca-xtp
vpfft
vpic
vsearch
vt
vtk	vtk: Added mpi variant (#9494)	2018-10-12 11:33:01 +02:00
vtkh
vtkm
wannier90
wcslib
wget	Download GNU packages from mirrors (#8992)	2018-08-15 23:27:21 -07:00
wgsim
windowswmproto
wireshark
workrave
wt
wx
wxpropgrid
x11perf
xapian-core
xauth
xbacklight
xbiff
xbitmaps
xbraid
xcalc
xcb-demo
xcb-proto
xcb-util
xcb-util-cursor
xcb-util-errors
xcb-util-image
xcb-util-keysyms
xcb-util-renderutil
xcb-util-wm
xcb-util-xrm
xclip
xclipboard
xclock
xcmiscproto
xcmsdb
xcompmgr
xconsole
xcursor-themes
xcursorgen
xdbedizzy
xditview
xdm
xdpyinfo
xdriinfo
xedit
xerces-c	xerces-c: add variant for transcoder, rework config flags. (#9393)	2018-10-09 15:12:34 -07:00
xev
xextproto
xeyes
xf86bigfontproto
xf86dga
xf86dgaproto
xf86driproto
xf86miscproto
xf86rushproto
xf86vidmodeproto
xfd
xfindproxy
xfontsel
xfs
xfsinfo
xfwp
xgamma
xgc
xhmm
xhost
xineramaproto
xinit
xinput
xios
xkbcomp
xkbdata
xkbevd
xkbprint
xkbutils
xkeyboard-config
xkill
xload
xlogo
xlsatoms
xlsclients
xlsfonts
xmag
xman
xmessage
xmh
xmlf90
xmlto
xmodmap
xmore
xorg-cf-files
xorg-docs
xorg-gtest
xorg-server
xorg-sgml-doctools
xphelloworld
xplor-nih
xplsprinters
xpr
xprehashprinterlist
xprop
xproto
xproxymanagementprotocol
xqilla
xrandr
xrdb
xrefresh
xrootd
xrx
xsbench	fix build errors, make mpi variant default and add openmp variant (#9364)	2018-09-26 19:47:51 -06:00
xscope
xsd
xsdk	xsdk: reorder develop version statements (#9469)	2018-10-09 14:19:29 -05:00
xsdktrilinos
xset
xsetmode
xsetpointer
xsetroot
xsimd
xsm
xstdcmap
xtensor
xtensor-python
xterm
xtl
xtrans
xtrap
xts
xvidtune
xvinfo
xwd
xwininfo
xwud
xxhash
xz
yajl
yambo
yaml-cpp	yaml-cpp: conflict with gcc 4.7 instead of 4.8 (#9371)	2018-09-27 13:37:36 -07:00
yasm
yorick
z3
zeromq
zfp
zip
zlib
zoltan
zsh
zstd