spack/var/spack/repos/builtin/packages/cromwell-womtool/package.py
Todd Gamblin 24c01d57cf
imports: sort imports everywhere in Spack (#24695)
* fix remaining flake8 errors

* imports: sort imports everywhere in Spack

We enabled import order checking in #23947, but fixing things manually drives
people crazy. This used `spack style --fix --all` from #24071 to automatically
sort everything in Spack so PR submitters won't have to deal with it.

This should go in after #24071, as it assumes we're using `isort`, not
`flake8-import-order` to order things. `isort` seems to be more flexible and
allows `llnl` mports to be in their own group before `spack` ones, so this
seems like a good switch.
2021-07-08 22:12:30 +00:00

42 lines
1.5 KiB
Python

# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import os.path
from spack import *
class CromwellWomtool(Package):
"""Command line utilities for interacting with the
Workflow Object Model (WOM).
"""
homepage = "https://cromwell.readthedocs.io/en/stable/WOMtool/"
url = "https://github.com/broadinstitute/cromwell/releases/download/44/womtool-44.jar"
version('44', sha256='b17c0f4933d7b136c7d9760f7858f6439e3c6371f12492e2aeaab3209c28f80a', expand=False)
depends_on('java@8', type='run')
def install(self, spec, prefix):
mkdirp(prefix.bin)
jar_file = 'womtool-{0}.jar'.format(self.version)
install(jar_file, prefix.bin)
# Set up a helper script to call java on the jar file,
# explicitly codes the path for java and the jar file.
script_sh = join_path(os.path.dirname(__file__), "womtool.sh")
script = prefix.bin.womtool
install(script_sh, script)
set_executable(script)
# Munge the helper script to explicitly point to java and the
# jar file.
java = self.spec['java'].prefix.bin.java
kwargs = {'ignore_absent': False, 'backup': False, 'string': False}
filter_file('^java', java, script, **kwargs)
filter_file('womtool.jar', join_path(prefix.bin, jar_file),
script, **kwargs)