a8ccb8e116
- [x] add `concretize.lp`, `spack.yaml`, etc. to licensed files
- [x] update all licensed files to say 2013-2021 using
`spack license update-copyright-year`
- [x] appease mypy with some additions to package.py that needed
for oneapi.py
31 lines
1.4 KiB
Python
31 lines
1.4 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RPhangorn(RPackage):
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"""Package contains methods for estimation of phylogenetic trees and
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networks using Maximum Likelihood, Maximum Parsimony, distance methods
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and Hadamard conjugation. Allows to compare trees, models selection and
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offers visualizations for trees and split networks."""
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homepage = "https://cloud.r-project.org/package=phangorn"
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url = "https://cloud.r-project.org/src/contrib/phangorn_2.3.1.tar.gz"
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list_url = "https://cloud.r-project.org/src/contrib/Archive/phangorn"
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version('2.5.5', sha256='c58dc1ace26cb4358619a15da3ea4765dbdde1557acccc5103c85589a7571346')
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version('2.5.3', sha256='a306585a0aabe7360a2adaf9116ae2993fb5ceff641b198f2e01e4329d3768af')
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version('2.3.1', sha256='518c31f5b2c5f0a655d02a3c71b00c30caea2794dfc31f9d63f3d505bd7863eb')
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depends_on('r@3.2.0:', type=('build', 'run'))
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depends_on('r-ape@5.0:', type=('build', 'run'))
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depends_on('r-quadprog', type=('build', 'run'))
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depends_on('r-igraph@1.0:', type=('build', 'run'))
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depends_on('r-matrix', type=('build', 'run'))
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depends_on('r-fastmatch', type=('build', 'run'))
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depends_on('r-magrittr', type=('build', 'run'))
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depends_on('r-rcpp@0.12.0:', type=('build', 'run'))
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