f780839b87
* examl + * examl style fix * examl flake8 fix * Update var/spack/repos/builtin/packages/examl/package.py using `working_dir` Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
51 lines
2.2 KiB
Python
51 lines
2.2 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Examl(MakefilePackage):
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"""
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Exascale Maximum Likelihood (ExaML) code for phylogenetic inference
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using MPI. This code implements the popular RAxML search algorithm
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for maximum likelihood based inference of phylogenetic trees.
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"""
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homepage = "https://github.com/stamatak/ExaML"
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url = "https://github.com/stamatak/ExaML/archive/v3.0.22.tar.gz"
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maintainers = ['robqiao']
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version('3.0.22', sha256='802e673b0c2ea83fdbe6b060048d83f22b6978933a04be64fb9b4334fe318ca3')
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version('3.0.21', sha256='6c7e6c5d7bf4ab5cfbac5cc0d577885272a803c142e06b531693a6a589102e2e')
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version('3.0.20', sha256='023681248bbc7f19821b509948d79301e46bbf275aa90bf12e9f4879639a023b')
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version('3.0.19', sha256='3814230bf7578b8396731dc87ce665d0b1a671d8effd571f924c5b7936ae1c9e')
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version('3.0.18', sha256='1bacb5124d943d921e7beae52b7062626d0ce3cf2f83e3aa3acf6ea26cf9cd87')
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version('3.0.17', sha256='90a859e0b8fff697722352253e748f03c57b78ec5fbc1ae72f7e702d299dac67')
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version('3.0.16', sha256='abc922994332d40892e30f077e4644db08cd59662da8e2a9197d1bd8bcb9aa5f')
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version('3.0.15', sha256='da5e66a63d6fa34b640535c359d8daf67f23bd2fcc958ac604551082567906b0')
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version('3.0.14', sha256='698b538996946ae23a2d6fa1e230c210832e59080da33679ff7d6b342a9e6180')
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version('3.0.13', sha256='893aecb5545798235a17975aa07268693d3526d0aee0ed59a2d6e791248791ed')
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variant('mpi', default=True, description='Enable MPI parallel support')
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depends_on('mpi', when='+mpi')
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def build(self, spec, prefix):
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#####################
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# Build Directories #
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#####################
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with working_dir('examl'):
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make('-f', 'Makefile.SSE3.gcc')
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with working_dir('parser'):
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make('-f', 'Makefile.SSE3.gcc')
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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install("examl/examl", prefix.bin)
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install("parser/parse-examl", prefix.bin)
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install_tree("manual", prefix.manual)
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install_tree("testData", prefix.testData)
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