35 lines
1.5 KiB
Python
35 lines
1.5 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RGlimma(RPackage):
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"""Interactive HTML graphics.
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This package generates interactive visualisations for analysis of RNA-
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sequencing data using output from limma, edgeR or DESeq2 packages in an
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HTML page. The interactions are built on top of the popular static
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representations of analysis results in order to provide additional
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information."""
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homepage = "https://bioconductor.org/packages/Glimma"
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git = "https://git.bioconductor.org/packages/Glimma.git"
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version('1.12.0', commit='d02174239fe0b47983d6947ed42a1a53b24caecb')
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version('1.10.1', commit='ffc7abc36190396598fadec5e9c653441e47be72')
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version('1.8.2', commit='7696aca2c023f74d244b6c908a6e7ba52bfcb34b')
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version('1.6.0', commit='57572996982806aa7ac155eedb97b03249979610')
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version('1.4.0', commit='c613c5334ed7868f36d5716b97fdb6234fb291f8')
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depends_on('r@3.3.0:', type=('build', 'run'))
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depends_on('r-biobase', when='@1.4.0:1.6.0', type=('build', 'run'))
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depends_on('r-edger', type=('build', 'run'))
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depends_on('r-jsonlite', type=('build', 'run'))
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depends_on('r-scater', when='@1.4.0', type=('build', 'run'))
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depends_on('r-s4vectors', type=('build', 'run'))
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depends_on('r@3.4.0:', when='@1.6.0:', type=('build', 'run'))
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