34 lines
1.3 KiB
Python
34 lines
1.3 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Stacks(AutotoolsPackage):
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"""Stacks is a software pipeline for building loci from short-read
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sequences, such as those generated on the Illumina platform."""
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homepage = "http://catchenlab.life.illinois.edu/stacks/"
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url = "http://catchenlab.life.illinois.edu/stacks/source/stacks-1.46.tar.gz"
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version('2.53', sha256='ee1efceaeeeb7a39f0c2e804ad7c0a003094db28c9101120c38ddb02846e90fd')
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version('2.3b', sha256='a46786d8811a730ebcdc17891e89f50d4f4ae196734439dac86091f45c92ac72')
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version('1.46', sha256='45a0725483dc0c0856ad6b1f918e65d91c1f0fe7d8bf209f76b93f85c29ea28a')
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variant('sparsehash', default=True, description='Improve Stacks memory usage with SparseHash')
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depends_on('perl', type=('build', 'run'))
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depends_on('sparsehash', when='+sparsehash')
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depends_on('zlib', when='@2.3b:')
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conflicts('%gcc@:4.9.0', when='@2.3b:')
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def configure_args(self):
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args = []
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if '+sparsehash' in self.spec:
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args.append('--enable-sparsehash')
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else:
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args.append('--disable-sparsehash')
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return args
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