26 lines
865 B
Python
26 lines
865 B
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
|
|
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
#
|
|
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
|
|
from spack import *
|
|
|
|
|
|
class Phantompeakqualtools(RPackage):
|
|
"""This package computes informative enrichment and quality measures for
|
|
ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data."""
|
|
|
|
homepage = "https://github.com/kundajelab/phantompeakqualtools"
|
|
url = "https://github.com/kundajelab/phantompeakqualtools/archive/1.2.tar.gz"
|
|
|
|
version('1.2', 'e94943a42132b9ff2886f006ab34c121')
|
|
|
|
depends_on('awk')
|
|
depends_on('samtools')
|
|
depends_on('r', type=('build', 'run'))
|
|
depends_on('r-phantompeakqualtools', type=('build', 'run'))
|
|
|
|
def install(self, spec, prefix):
|
|
mkdirp(prefix.bin)
|
|
install('run_spp.R', prefix.bin)
|