34 lines
1.5 KiB
Python
34 lines
1.5 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RQvalue(RPackage):
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"""This package takes a list of p-values resulting from the
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simultaneous testing of many hypotheses and estimates their
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q-values and local FDR values. The q-value of a test measures
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the proportion of false positives incurred (called the false
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discovery rate) when that particular test is called significant.
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The local FDR measures the posterior probability the null
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hypothesis is true given the test's p-value. Various plots are
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automatically generated, allowing one to make sensible
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significance cut-offs. Several mathematical results have
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recently been shown on the conservative accuracy of the
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estimated q-values from this software. The software can be
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applied to problems in genomics, brain imaging, astrophysics,
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and data mining."""
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homepage = "https://www.bioconductor.org/packages/qvalue/"
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git = "https://git.bioconductor.org/packages/qvalue.git"
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version('2.12.0', commit='7df64ebfcbe69dcbf8b88cb6ef0068bf16979673')
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version('2.8.0', commit='c7bf3315619d42d800f57a36670c25a7495ded72')
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depends_on('r-ggplot2', type=('build', 'run'))
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depends_on('r-reshape2', type=('build', 'run'))
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depends_on('r@3.4.0:3.4.9', when='@2.8.0', type=('build', 'run'))
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depends_on('r@3.5.0:3.5.9', when='@2.12.0', type=('build', 'run'))
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