54 lines
2.3 KiB
Python
54 lines
2.3 KiB
Python
##############################################################################
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# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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import distutils.dir_util
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import os
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class Chlorop(Package):
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"""Chlorop predicts the presence of chloroplast transit peptides
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in protein sequences and the location of potential cTP cleavage
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sites. You will need to obtain the tarball by visiting the
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URL and completing the form. You can then either run spack
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install with the tarball in the directory, or add it to a
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mirror. You will need to set the CHLOROTMP environment variable
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to the full path of the directory you want chlorop to use as
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a temporary directory."""
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homepage = "http://www.cbs.dtu.dk/services/ChloroP/"
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url = "file://{0}/chlorop-1.1.Linux.tar.gz".format(os.getcwd())
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version('1.1', 'eb0ba6b28dfa735163ad5fc70e30139e46e33f6ae27f87666a7167a4ac5f71d9')
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depends_on('awk', type='run')
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patch('chlorop.patch')
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def install(self, spec, prefix):
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os.rename('chlorop', 'bin/chlorop')
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distutils.dir_util.copy_tree(".", prefix)
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def setup_environment(self, spack_env, run_env):
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run_env.set('CHLOROP', self.prefix)
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