72 lines
3.1 KiB
Python
72 lines
3.1 KiB
Python
##############################################################################
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# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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import inspect
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class PerlBioPerl(PerlPackage):
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"""Functional access to BioPerl for people who don't know objects"""
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homepage = "http://search.cpan.org/~cjfields/BioPerl-1.007002/Bio/Perl.pm"
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url = "http://search.cpan.org/CPAN/authors/id/C/CJ/CJFIELDS/BioPerl-1.007002.tar.gz"
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version('1.007002', 'a912c92b56d009198f1786b4cf560d5c')
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depends_on('perl-module-build', type='build')
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depends_on('perl-uri-escape', type=('build', 'run'))
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depends_on('perl-io-string', type=('build', 'run'))
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depends_on('perl-data-stag', type=('build', 'run'))
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depends_on('perl-test-most', type=('build', 'run'))
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def configure(self, spec, prefix):
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# Overriding default configure method in order to cater to interactive
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# Build.pl
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self.build_method = 'Build.PL'
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self.build_executable = Executable(
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join_path(self.stage.source_path, 'Build'))
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# Config questions consist of:
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# Do you want to run the Bio::DB::GFF or Bio::DB::SeqFeature::Store
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# live database tests? y/n [n]
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#
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# Install [a]ll BioPerl scripts, [n]one, or choose groups
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# [i]nteractively? [a]
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#
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# Do you want to run tests that require connection to servers across
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# the internet (likely to cause some failures)? y/n [n]
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#
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# Eventually, someone can add capability for the other options, but
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# the current answers are the most practical for a spack install.
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config_answers = ['n\n', 'a\n', 'n\n']
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config_answers_filename = 'spack-config.in'
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with open(config_answers_filename, 'w') as f:
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f.writelines(config_answers)
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with open(config_answers_filename, 'r') as f:
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inspect.getmodule(self).perl('Build.PL', '--install_base=%s' %
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self.prefix, input=f)
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