37 lines
1.2 KiB
Python
37 lines
1.2 KiB
Python
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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from spack.pkg.builtin.boost import Boost
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class Hisea(MakefilePackage):
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"""HISEA is an efficient all-vs-all long read aligner for SMRT sequencing
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data. Its algorithm is designed to produce highest alignment sensitivity
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among others."""
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homepage = "https://doi.org/10.1186/s12859-017-1953-9"
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license("GPL-3.0-only")
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version(
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"2017.12.26",
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sha256="3c6ddfb8490a327cc5f9e45f64cd4312abc6ef5719661ce8892db8a20a1e9c5e",
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url="https://github.com/lucian-ilie/HISEA/tarball/39e01e98caa0f2101da806ca59306296effe789c",
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)
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# TODO: replace this with an explicit list of components of Boost,
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# for instance depends_on('boost +filesystem')
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# See https://github.com/spack/spack/pull/22303 for reference
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depends_on(Boost.with_default_variants)
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def patch(self):
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if self.spec.target.family == "aarch64":
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filter_file("-mpopcnt", "", "Makefile")
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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install("hisea", prefix.bin)
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