37 lines
1.2 KiB
Python
37 lines
1.2 KiB
Python
# Copyright Spack Project Developers. See COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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import os
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from spack.package import *
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class Tmhmm(Package):
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"""Transmembrane helices in proteins
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Note: A manual download is required for TMHMM.
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Spack will search your current directory for the download file.
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Alternatively, add this file to a mirror so that Spack can find it.
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For instructions on how to set up a mirror, see
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https://spack.readthedocs.io/en/latest/mirrors.html"""
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homepage = "http://www.cbs.dtu.dk/cgi-bin/nph-sw_request?tmhmm"
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url = "file://{0}/tmhmm-2.0c.Linux.tar.gz".format(os.getcwd())
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manual_download = True
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version("2.0c", md5="359db0c4ecf84d1ade5786abe844d54e")
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depends_on("perl", type="run")
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def patch(self):
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with working_dir("bin"):
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tmhmm = FileFilter("tmhmmformat.pl")
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tmhmm.filter("#!/usr/local/bin/perl -w", "#!/usr/bin/env perl")
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tmhmm = FileFilter("tmhmm")
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tmhmm.filter("#!/usr/local/bin/perl", "#!/usr/bin/env perl")
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def install(self, spec, prefix):
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install_tree("bin", prefix.bin)
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install_tree("lib", prefix.lib)
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