58 lines
2.2 KiB
Python
58 lines
2.2 KiB
Python
##############################################################################
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# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class SnapBerkeley(MakefilePackage):
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"""SNAP is a fast and accurate aligner for short DNA reads. It is
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optimized for modern read lengths of 100 bases or higher, and takes
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advantage of these reads to align data quickly through a hash-based
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indexing scheme."""
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homepage = "http://snap.cs.berkeley.edu/"
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url = "https://github.com/amplab/snap/archive/v1.0beta.18.tar.gz"
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version('1.0beta.18', '41e595fffa482e9eda1c3f69fb5dedeb')
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version('0.15', 'a7d87cc822f052665a347ab0aa84d4de', preferred=True)
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depends_on('zlib')
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conflicts('%gcc@6:')
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conflicts('%cce')
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conflicts('%clang')
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conflicts('%intel')
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conflicts('%nag')
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conflicts('%pgi')
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conflicts('%xl')
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conflicts('%xl_r')
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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if self.spec.satisfies('@1.0beta.18:'):
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install('snap-aligner', prefix.bin)
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install('SNAPCommand', prefix.bin)
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else:
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install('snap', prefix.bin)
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