a8ccb8e116
- [x] add `concretize.lp`, `spack.yaml`, etc. to licensed files
- [x] update all licensed files to say 2013-2021 using
`spack license update-copyright-year`
- [x] appease mypy with some additions to package.py that needed
for oneapi.py
29 lines
1.0 KiB
Python
29 lines
1.0 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
|
|
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
#
|
|
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
|
|
from spack import *
|
|
|
|
|
|
class Pbsuite(Package, SourceforgePackage):
|
|
"""PBJelly is a highly automated pipeline that aligns long sequencing
|
|
reads (such as PacBio RS reads or long 454 reads in fasta format)
|
|
to high-confidence draft assembles."""
|
|
|
|
homepage = "https://sourceforge.net/p/pb-jelly/wiki/Home/"
|
|
sourceforge_mirror_path = "pb-jelly/PBSuite_15.8.24.tgz"
|
|
|
|
version('15.8.24', sha256='1be082faa62cb3f701c78498db8544c844c3d6d3e3524fecf00a12e82a97e12b')
|
|
|
|
depends_on('blasr@1.3.1:', type='run')
|
|
depends_on('python@2.7:', type='run')
|
|
depends_on('py-networkx@1.1:', type='run')
|
|
|
|
def install(self, spec, prefix):
|
|
install_tree('pbsuite', prefix.pbsuite)
|
|
install_tree('bin', prefix.bin)
|
|
|
|
def setup_run_environment(self, env):
|
|
env.prepend_path('PYTHONPATH', self.prefix)
|