abbc47823d
* SourceForge: Mirror Mixin Add a mixing class for direct `CNAME`s to sourceforge mirrors. Since the main gateway servers are often down, this could reduce timeouts and fetch errors for sourceforge.net hosted software. * SourceForge: unspectacular mirror replacement add mirrors to all sourceforge packages with trivial download logic. tested fetch of latest version of each of these packages with various mirrors before committing. * SourceForge: xz the author homepage is chronocially overrun and this is the offical upload with many mirrors.
34 lines
1.2 KiB
Python
34 lines
1.2 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Meraculous(CMakePackage, SourceforgePackage):
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"""Meraculous is a while genome assembler for Next Generation Sequencing
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data geared for large genomes."""
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homepage = "http://jgi.doe.gov/data-and-tools/meraculous/"
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sourceforge_mirror_path = "meraculous20/Meraculous-v2.2.4.tar.gz"
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git = "https://bitbucket.org/berkeleylab/genomics-meraculous2.git"
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version('2.2.5.1', branch='release-2.2.5.1')
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version('2.2.4', sha256='3b4b8848232be902af9ebc77b38b83bcc531f12120115be089bdd6371ad2bf5b')
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depends_on('perl', type=('build', 'run'))
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depends_on('boost@1.5.0:')
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depends_on('gnuplot@3.7:')
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depends_on('perl-log-log4perl', type=('build', 'run'))
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conflicts('%gcc@6.0.0:', when='@2.2.4')
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def patch(self):
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edit = FileFilter('CMakeLists.txt')
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edit.filter(r"-static-libstdc\+\+", "")
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def setup_run_environment(self, env):
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env.set('MERACULOUS_ROOT', self.prefix)
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env.prepend_path('PERL5LIB', self.prefix.lib)
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