31 lines
1.2 KiB
Python
31 lines
1.2 KiB
Python
# Copyright Spack Project Developers. See COPYRIGHT file for details.
|
|
#
|
|
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
|
|
from spack.package import *
|
|
|
|
|
|
class Mixcr(Package):
|
|
"""MiXCR is a universal framework that processes big immunome data from
|
|
raw sequences to quantitated clonotypes. MiXCR efficiently handles
|
|
paired- and single-end reads, considers sequence quality, corrects PCR
|
|
errors and identifies germline hypermutations. The software supports
|
|
both partial- and full-length profiling and employs all available RNA or
|
|
DNA information, including sequences upstream of V and downstream of J
|
|
gene segments."""
|
|
|
|
homepage = "https://mixcr.readthedocs.io/en/master/index.html"
|
|
url = "https://github.com/milaboratory/mixcr/releases/download/v3.0.2/mixcr-3.0.2.zip"
|
|
|
|
version("4.6.0", sha256="05db1276951a2e656d0a7bf4e2b1fff326733a5f961a9d4829be139852fabe13")
|
|
version("4.3.2", sha256="8f67cda8e55eeee66b46db0f33308418b6ddb63ca8914623035809ccb5aae2c2")
|
|
version("3.0.2", sha256="b4dcad985053438d5f5590555f399edfbd8cb514e1b9717620ee0ad0b5eb6b33")
|
|
|
|
depends_on("java@8:")
|
|
|
|
def install(self, spec, prefix):
|
|
install_tree(".", prefix)
|
|
|
|
def setup_run_environment(self, env):
|
|
env.prepend_path("PATH", self.prefix)
|