50 lines
2.1 KiB
Python
50 lines
2.1 KiB
Python
##############################################################################
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# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class RPhantompeakqualtools(RPackage):
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"""Computes informative enrichment and quality measures for
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ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. This is a modified version
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of r-spp to be used in conjunction with the phantompeakqualtools
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package."""
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homepage = "https://github.com/kundajelab/phantompeakqualtools"
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url = "https://github.com/kundajelab/phantompeakqualtools/raw/master/spp_1.14.tar.gz"
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version('1.14', '4de207d570999170c1bf45bcba8c6d2d')
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depends_on('boost@1.41.0:')
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depends_on('r-catools', type=('build', 'run'))
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depends_on('r-snow', type=('build', 'run'))
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depends_on('r-snowfall', type=('build', 'run'))
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depends_on('r-bitops', type=('build', 'run'))
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depends_on('r-rsamtools', type=('build', 'run'))
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conflicts('%gcc@6:')
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def setup_environment(self, spack_env, run_env):
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spack_env.set('BOOST_ROOT', self.spec['boost'].prefix)
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