27 lines
1.1 KiB
Python
27 lines
1.1 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Discovardenovo(AutotoolsPackage):
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"""DISCOVAR de novo is a large (and small) de novo genome assembler.
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It quickly generates highly accurate and complete assemblies using the
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same single library data as used by DISCOVAR. It currently doesn't
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support variant calling, for that, please use DISCOVAR instead."""
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homepage = "https://software.broadinstitute.org/software/discovar/blog/"
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url = "ftp://ftp.broadinstitute.org/pub/crd/DiscovarDeNovo/latest_source_code/discovardenovo-52488.tar.gz"
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version('52488', sha256='445445a3b75e17e276a6119434f13784a5a661a9c7277f5e10f3b6b3b8ac5771')
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# lots of compiler errors with GCC7, works with 4.8.5
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# and devs claim it works with 4.7 so I'm assuming 4.7-4.8'll work
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conflicts('%gcc@5:')
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conflicts('%gcc@:4.7.0')
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depends_on('samtools')
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depends_on('jemalloc')
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