8aa1eba2e0
This PR creates the r-watermelon package, along with dependencies. - new package: r-fdb-infiniummethylation-hg19 - new package: r-illuminahumanmethylation450kanno-ilmn12-hg19 - new package: r-lumi - new package: r-methylumi - new package: r-roc - new package: r-txdb-hsapiens-ucsc-hg19-knowngene - updated package: r-matrixstats, new version needed as a dependency
24 lines
1.1 KiB
Python
24 lines
1.1 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RFdbInfiniummethylationHg19(RPackage):
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"""Compiled HumanMethylation27 and HumanMethylation450 annotations."""
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# No available git repository
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homepage = "https://bioconductor.org/packages/release/data/annotation/html/FDb.InfiniumMethylation.hg19.html"
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url = "https://bioconductor.org/packages/release/data/annotation/src/contrib/FDb.InfiniumMethylation.hg19_2.2.0.tar.gz"
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version('2.2.0', sha256='605aa3643588a2f40a942fa760b92662060a0dfedb26b4e4cd6f1a78b703093f')
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depends_on('r@2.10:', type=('build', 'run'))
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depends_on('r-genomicfeatures@1.7.22:', type=('build', 'run'))
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depends_on('r-txdb-hsapiens-ucsc-hg19-knowngene', type=('build', 'run'))
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depends_on('r-org-hs-eg-db', type=('build', 'run'))
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depends_on('r-annotationdbi', type=('build', 'run'))
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depends_on('r-biostrings', type=('build', 'run'))
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