ed9ab0668f
* Update htslib and add libcurl variant This PR updates htslib to version 1.10.2 and adds a libcurl variant. The libcurl variant defaults to True because, while it is optional, it is highly recommended by the project developers. Other things done: - be consistent with quotes * Change version in variant description Apparently, `spack info` does not like the `@` character in a variant description. ``` ==> Error: Incomplete color format: '@' in @1.3:. ```
57 lines
2.4 KiB
Python
57 lines
2.4 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Htslib(AutotoolsPackage):
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"""C library for high-throughput sequencing data formats."""
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homepage = "https://github.com/samtools/htslib"
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url = "https://github.com/samtools/htslib/releases/download/1.10.2/htslib-1.10.2.tar.bz2"
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version('1.10.2', sha256='e3b543de2f71723830a1e0472cf5489ec27d0fbeb46b1103e14a11b7177d1939')
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version('1.9', sha256='e04b877057e8b3b8425d957f057b42f0e8509173621d3eccaedd0da607d9929a')
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version('1.8', sha256='c0ef1eec954a98cc708e9f99f6037db85db45670b52b6ab37abcc89b6c057ca1')
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version('1.7', sha256='be3d4e25c256acdd41bebb8a7ad55e89bb18e2fc7fc336124b1e2c82ae8886c6')
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version('1.6', sha256='9588be8be0c2390a87b7952d644e7a88bead2991b3468371347965f2e0504ccb')
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version('1.5', sha256='a02b515ea51d86352b089c63d778fb5e8b9d784937cf157e587189cb97ad922d')
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version('1.4', sha256='5cfc8818ff45cd6e924c32fec2489cb28853af8867a7ee8e755c4187f5883350')
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version('1.3.1', sha256='49d53a2395b8cef7d1d11270a09de888df8ba06f70fe68282e8235ee04124ae6')
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version('1.2', sha256='125c01421d5131afb4c3fd2bc9c7da6f4f1cd9ab5fc285c076080b9aca24bffc')
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variant('libcurl',
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default=True,
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description='Enable libcurl-based support for http/https/etc URLs,'
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' for versions >= 1.3. This also enables S3 and GCS support.')
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depends_on('zlib')
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depends_on('bzip2', when='@1.4:')
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depends_on('xz', when='@1.4:')
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depends_on('curl', when='@1.3:+libcurl')
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depends_on('m4', when="@1.2")
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depends_on('autoconf', when="@1.2")
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depends_on('automake', when="@1.2")
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depends_on('libtool', when="@1.2")
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# v1.2 uses the automagically assembled tarball from .../archive/...
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# everything else uses the tarballs uploaded to the release
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def url_for_version(self, version):
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if version.string == '1.2':
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return 'https://github.com/samtools/htslib/archive/1.2.tar.gz'
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else:
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url = "https://github.com/samtools/htslib/releases/download/{0}/htslib-{0}.tar.bz2"
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return url.format(version.dotted)
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def configure_args(self):
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spec = self.spec
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args = []
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if spec.satisfies('@1.3:'):
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args.extend(self.enable_or_disable('libcurl'))
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return args
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