8aa1eba2e0
This PR creates the r-watermelon package, along with dependencies. - new package: r-fdb-infiniummethylation-hg19 - new package: r-illuminahumanmethylation450kanno-ilmn12-hg19 - new package: r-lumi - new package: r-methylumi - new package: r-roc - new package: r-txdb-hsapiens-ucsc-hg19-knowngene - updated package: r-matrixstats, new version needed as a dependency
21 lines
919 B
Python
21 lines
919 B
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RTxdbHsapiensUcscHg19Knowngene(RPackage):
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"""Exposes an annotation databases generated from UCSC by exposing these as
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TxDb objects."""
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# This is a bioconductor package but there is no available git repo.
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homepage = "https://bioconductor.org/packages/release/data/annotation/html/TxDb.Hsapiens.UCSC.hg19.knownGene.html"
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url = "https://bioconductor.org/packages/release/data/annotation/src/contrib/TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2.tar.gz"
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version('3.2.2', sha256='063de2b1174782a0b2b8ab7f04a0bdf3c43252cb67c685a9f8ef2b8e318352e9')
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depends_on('r-genomicfeatures@1.21.30:', type=('build', 'run'))
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depends_on('r-annotationdbi', type=('build', 'run'))
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