53 lines
1.9 KiB
Python
53 lines
1.9 KiB
Python
##############################################################################
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# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Sambamba(Package):
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"""Sambamba: process your BAM data faster (bioinformatics)"""
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homepage = "http://lomereiter.github.io/sambamba/"
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git = "https://github.com/lomereiter/sambamba.git"
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version('0.6.6', tag='v0.6.6', submodules=True)
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depends_on('ldc~shared', type=('build', 'link'))
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depends_on('python', type='build')
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resource(
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name='undeaD',
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git='https://github.com/dlang/undeaD.git',
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tag='v1.0.7',
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)
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patch('Makefile.patch')
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parallel = False
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def install(self, spec, prefix):
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make('sambamba-ldmd2-64')
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mkdirp(prefix.bin)
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for filename in ('build/sambamba', 'build/sambamba.debug'):
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install(filename, prefix.bin)
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