49 lines
1.9 KiB
Python
49 lines
1.9 KiB
Python
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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from spack.pkg.builtin.boost import Boost
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class HybridLambda(AutotoolsPackage):
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"""Hybrid-Lambda is a software package that can simulate gene trees
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within a rooted species network or a rooted species tree under the
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coalescent process.
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The main feature of this program is that users can
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choose to use the standard Kingman coalescent process, which produces
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bifurcating genealogies, or two other Lambda coalescent processes,
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which produce multifurcating genealogies. The other feature is that
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hybrid sim uses extended Newick formatted strings to make it easier to
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represent hybridization events between species."""
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homepage = "https://github.com/hybridLambda/hybrid-Lambda"
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git = "https://github.com/hybridLambda/hybrid-Lambda.git"
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license("GPL-3.0-only")
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version("develop", submodules=True)
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depends_on("autoconf", type="build")
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depends_on("automake", type="build")
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depends_on("libtool", type="build")
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depends_on("m4", type="build")
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# TODO: replace this with an explicit list of components of Boost,
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# for instance depends_on('boost +filesystem')
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# See https://github.com/spack/spack/pull/22303 for reference
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depends_on(Boost.with_default_variants)
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depends_on("cppunit", type="test")
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@run_after("configure")
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def change_install_option_in_makefile(self):
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with working_dir("src"):
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filter_file(r"INSTALL = /bin/install -c", "INSTALL = /bin/install -C", "Makefile")
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@on_package_attributes(run_tests=True)
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def setup_build_environment(self, env):
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# build testcases with cppunit
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env.prepend_path("LD_LIBRARY_PATH", self.spec["cppunit"].libs.directories[0])
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