eea786f4e8
- remove the old LGPL license headers from all files in Spack - add SPDX headers to all files - core and most packages are (Apache-2.0 OR MIT) - a very small number of remaining packages are LGPL-2.1-only
36 lines
1.3 KiB
Python
36 lines
1.3 KiB
Python
# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Shoremap(MakefilePackage):
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"""SHOREmap is a computational tool implementing a method that enables
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simple and straightforward mapping-by-sequencing analysis.
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Whole genome resequencing of pools of recombinant mutant genomes allows
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directly linking phenotypic traits to causal mutations. Such an
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analysis, called mapping-by-sequencing, combines classical genetic
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mapping and next generation sequencing by relying on selection-induced
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patterns within genome-wide allele frequency in pooled genomes."""
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homepage = "http://bioinfo.mpipz.mpg.de/shoremap/"
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url = "http://bioinfo.mpipz.mpg.de/shoremap/SHOREmap_v3.6.tar.gz"
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version('3.6', 'ccc9331189705a139d50f2c161178cb1')
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depends_on('dislin')
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def edit(self, spec, prefix):
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makefile = FileFilter('makefile')
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makefile.filter(r'-L/usr/lib/',
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self.spec['libxt'].libs.search_flags)
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makefile.filter(r'-L\./dislin.* -ldislin_d',
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self.spec['dislin:d'].libs.ld_flags)
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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install('SHOREmap', prefix.bin)
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