44 lines
2.1 KiB
Python
44 lines
2.1 KiB
Python
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RAdegenet(RPackage):
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"""Exploratory Analysis of Genetic and Genomic Data.
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Toolset for the exploration of genetic and genomic data. Adegenet provides
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formal (S4) classes for storing and handling various genetic data,
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including genetic markers with varying ploidy and hierarchical population
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structure ('genind' class), alleles counts by populations ('genpop'), and
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genome-wide SNP data ('genlight'). It also implements original multivariate
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methods (DAPC, sPCA), graphics, statistical tests, simulation tools,
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distance and similarity measures, and several spatial methods. A range of
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both empirical and simulated datasets is also provided to illustrate
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various methods."""
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cran = "adegenet"
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version('2.1.5', sha256='e4eee8c41dae6cb0841db74ec6f9adb2580873f3e313471f37df58324c1857f2')
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version('2.1.3', sha256='0790114ecb22642683b5be1f4b3a6a49856e06dc2f9e21b9cba4390c2257f6c6')
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version('2.1.1', sha256='3043fe5d731a38ff0e266f090dcda448640c3d0fd61934c76da32d082e5dce7a')
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version('2.1.0', sha256='7ee44061002b41164bbc09256307ab02e536f4f2ac03f36c7dc8f85f6af4639a')
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version('2.0.1', sha256='7eddf46e64f680d54d034b68c50900d9bd5bc2e08309d062e230121b7460bb10')
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depends_on('r@2.14:', type=('build', 'run'))
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depends_on('r-ade4', type=('build', 'run'))
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depends_on('r-mass', type=('build', 'run'))
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depends_on('r-igraph', type=('build', 'run'))
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depends_on('r-ape', type=('build', 'run'))
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depends_on('r-shiny', type=('build', 'run'))
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depends_on('r-ggplot2', type=('build', 'run'))
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depends_on('r-seqinr', type=('build', 'run'))
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depends_on('r-boot', type=('build', 'run'))
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depends_on('r-reshape2', type=('build', 'run'))
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depends_on('r-dplyr@0.4.1:', type=('build', 'run'))
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depends_on('r-vegan', type=('build', 'run'))
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depends_on('r-spdep', type=('build', 'run'), when='@:2.1.3')
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