![]() * py-astropy: Add version 6.1 Added build info for version 6.1 in py-astropy. Requires a new additional package, astropy-iers-data which has been included as py-astropy-iers-data to match with spack's general naming conventions. Below is the output of the spack install showing successful build fro version 6.1 and the new py-astropy-iers-data package [+] /usr (external glibc-2.28-oj2wjfl2ao5inhfz4qehw6hlck2hizvp) [+] /opt/apps/spack/gcc-runtime-8.5.0-5k6kvi5 [+] /opt/apps/spack/bzip2-1.0.8-t65bq3t [+] /opt/apps/spack/libmd-1.0.4-zbdiprt [+] /opt/apps/spack/libiconv-1.17-jskazis [+] /opt/apps/spack/util-linux-uuid-2.38.1-w3kgjq3 [+] /opt/apps/spack/libxcrypt-4.4.35-zigqpjo [+] /opt/apps/spack/xz-5.4.6-axoznvt [+] /opt/apps/spack/zlib-ng-2.1.6-ccn5qny [+] /opt/apps/spack/libyaml-0.2.5-fxathvq [+] /opt/apps/spack/ncurses-6.4-xbvwv2w [+] /opt/apps/spack/zstd-1.5.6-nyk6gt6 [+] /opt/apps/spack/pcre2-10.42-fu62kky [+] /opt/apps/spack/libunistring-1.2-whrov3e [+] /opt/apps/spack/nghttp2-1.57.0-u72gxms [+] /opt/apps/spack/openblas-0.3.26-pfyk2vi [+] /opt/apps/spack/berkeley-db-18.1.40-jftva2u [+] /opt/apps/spack/wcslib-7.3-zvcqq7o [+] /opt/apps/spack/libffi-3.4.6-ibucrfe [+] /opt/apps/spack/erfa-2.0.0-4qkta2n [+] /opt/apps/spack/pkgconf-1.9.5-ckjdqjm [+] /opt/apps/spack/libbsd-0.12.1-njt5grs [+] /opt/apps/spack/openssl-3.2.1-4lqdgni [+] /opt/apps/spack/pigz-2.8-rx263bp [+] /opt/apps/spack/readline-8.2-2ys6ede [+] /opt/apps/spack/libidn2-2.3.7-vnie4rz [+] /opt/apps/spack/libedit-3.1-20230828-676jwbd [+] /opt/apps/spack/libxml2-2.10.3-37klvxv [+] /opt/apps/spack/expat-2.6.2-7kfe3hb [+] /opt/apps/spack/curl-8.6.0-gpzsr3p [+] /opt/apps/spack/tar-1.34-wjzs4wj [+] /opt/apps/spack/gdbm-1.23-cylmqwx [+] /opt/apps/spack/sqlite-3.43.2-axuxulg [+] /opt/apps/spack/cfitsio-3.49-mmy3dbr [+] /opt/apps/spack/gettext-0.22.4-zjsp346 [+] /opt/apps/spack/perl-5.38.0-gzljgek [+] /opt/apps/spack/python-3.10.13-fz7fymx [+] /opt/apps/spack/krb5-1.20.1-tqiapsx [+] /opt/apps/spack/py-pyyaml-6.0-rju7jls [+] /opt/apps/spack/py-tomli-2.0.1-eanxpu2 [+] /opt/apps/spack/py-numpy-1.26.4-t5acjcv [+] /opt/apps/spack/python-venv-1.0-2cz5c3s [+] /opt/apps/spack/py-pip-23.0-lxkcvby [+] /opt/apps/spack/openssh-9.7p1-jxrkzso [+] /opt/apps/spack/py-pyerfa-2.0.0.1-kyfazhs [+] /opt/apps/spack/py-packaging-23.1-wkeyuk6 [+] /opt/apps/spack/py-typing-extensions-4.8.0-ujwbb6g [+] /opt/apps/spack/py-setuptools-69.2.0-3do76jw [+] /opt/apps/spack/py-wheel-0.41.2-brm3k3h [+] /opt/apps/spack/git-2.45.1-tuc5jnb [+] /opt/apps/spack/py-cython-3.0.0-zx62ssd ==> Installing py-astropy-iers-data-main-ukchsfzhfcyz6e6fxar6mtykqiavporj [52/55] ==> No binary for py-astropy-iers-data-main-ukchsfzhfcyz6e6fxar6mtykqiavporj found: installing from source ==> No patches needed for py-astropy-iers-data ==> py-astropy-iers-data: Executing phase: 'install' ==> py-astropy-iers-data: Successfully installed py-astropy-iers-data-main-ukchsfzhfcyz6e6fxar6mtykqiavporj Stage: 1.74s. Install: 0.93s. Post-install: 0.52s. Total: 3.36s [+] /opt/apps/spack/py-astropy-iers-data-main-ukchsfz [+] /opt/apps/spack/py-extension-helpers-0.1-a5hmr6j [+] /opt/apps/spack/py-setuptools-scm-8.0.4-qdhxchg ==> Installing py-astropy-6.1.0-f4pffru3kmyion2kq6muomgrfs5y4gdo [55/55] ==> No binary for py-astropy-6.1.0-f4pffru3kmyion2kq6muomgrfs5y4gdo found: installing from source ==> Fetching https://files.pythonhosted.org/packages/source/a/astropy/astropy-6.1.0.tar.gz ==> Ran patch() for py-astropy ==> py-astropy: Executing phase: 'install' ==> Warning: Module file /opt/modulefiles/spack/Core/py-astropy/6.1.0.lua exists and will not be overwritten ==> py-astropy: Successfully installed py-astropy-6.1.0-f4pffru3kmyion2kq6muomgrfs5y4gdo Stage: 1.29s. Install: 1m 5.77s. Post-install: 0.60s. Total: 1m 7.94s * Removed extra-whitespace A blank line had white space, removed the white space * Additional formatting changes for black * Additional package updates Based on previous recommendations updated py-astropy and py-astropy-iers-data packages. Also added a new version to py-pyerfa package to match the 6.1.0 dependencies better Of importance in these updates, I did add pypi and version info to py-astropy-iers-data. Originally I had argued that this package updates quite frequently (on a weekly basis) and so it did not make sense to include pypi/versions and we should instead use the non-version git-repo structure based on the master branch. However, when I tried to build the package py-setuptools-scm errored out when trying to build the package: /opt/apps/spack/py-setuptools-scm-8.0.4-ax2zqro/lib/python3.10/site-packages/setuptools_scm/git.py:163: UserWarning: "/tmp/root/spack-stage/spack-stage-py-astropy-iers-data-main-iw2mdzlukb37mkcbcozjjefjoefw2eyp/spack-src" is shallow and may cause errors I believe this is due to the download file/stage directory not containing the version and instead including the branch. I changed the package to use versions instead and it worked just fine as shown below. In addition, when I had done some preliminary testing, the package installed fine using the non-version master branch. When I checked, that installation it used py-setuptools-scm@7.1 while in this installation run it used a much more recent 8.0.4 so it is possible that somewhere between scm7.1 and 8.0.04 something changed that caused this error to show up. Since the setuptools-scm package has something to do extracting package versions, I imagine it's some kind of mismatch issue Output from build: spack install py-astropy [+] /usr (external glibc-2.28-oj2wjfl2ao5inhfz4qehw6hlck2hizvp) [+] /opt/apps/spack/gcc-runtime-8.5.0-5k6kvi5 [+] /opt/apps/spack/wcslib-7.3-zvcqq7o [+] /opt/apps/spack/xz-5.4.6-axoznvt [+] /opt/apps/spack/libffi-3.4.6-ibucrfe [+] /opt/apps/spack/erfa-2.0.0-4qkta2n [+] /opt/apps/spack/libmd-1.0.4-zbdiprt [+] /opt/apps/spack/util-linux-uuid-2.38.1-w3kgjq3 [+] /opt/apps/spack/libiconv-1.17-jskazis [+] /opt/apps/spack/berkeley-db-18.1.40-jftva2u [+] /opt/apps/spack/zstd-1.5.6-nyk6gt6 [+] /opt/apps/spack/ncurses-6.4-xbvwv2w [+] /opt/apps/spack/bzip2-1.0.8-t65bq3t [+] /opt/apps/spack/libunistring-1.2-whrov3e [+] /opt/apps/spack/pcre2-10.42-fu62kky [+] /opt/apps/spack/pkgconf-1.9.5-ckjdqjm [+] /opt/apps/spack/zlib-ng-2.1.6-ccn5qny [+] /opt/apps/spack/openblas-0.3.26-pfyk2vi [+] /opt/apps/spack/libxcrypt-4.4.35-zigqpjo [+] /opt/apps/spack/libyaml-0.2.5-fxathvq [+] /opt/apps/spack/libbsd-0.12.1-njt5grs [+] /opt/apps/spack/readline-8.2-2ys6ede [+] /opt/apps/spack/libidn2-2.3.7-vnie4rz [+] /opt/apps/spack/nghttp2-1.57.0-u72gxms [+] /opt/apps/spack/libedit-3.1-20230828-676jwbd [+] /opt/apps/spack/libxml2-2.10.3-37klvxv [+] /opt/apps/spack/openssl-3.2.1-4lqdgni [+] /opt/apps/spack/pigz-2.8-rx263bp [+] /opt/apps/spack/expat-2.6.2-7kfe3hb [+] /opt/apps/spack/sqlite-3.43.2-axuxulg [+] /opt/apps/spack/gdbm-1.23-cylmqwx [+] /opt/apps/spack/curl-8.6.0-gpzsr3p [+] /opt/apps/spack/tar-1.34-wjzs4wj [+] /opt/apps/spack/perl-5.38.0-gzljgek [+] /opt/apps/spack/cfitsio-3.49-mmy3dbr [+] /opt/apps/spack/gettext-0.22.4-zjsp346 [+] /opt/apps/spack/krb5-1.20.1-tqiapsx [+] /opt/apps/spack/python-3.10.13-fz7fymx [+] /opt/apps/spack/openssh-9.7p1-jxrkzso [+] /opt/apps/spack/py-tomli-2.0.1-eanxpu2 [+] /opt/apps/spack/py-setuptools-69.2.0-3do76jw [+] /opt/apps/spack/py-numpy-1.26.4-t5acjcv [+] /opt/apps/spack/python-venv-1.0-2cz5c3s [+] /opt/apps/spack/py-packaging-23.1-wkeyuk6 [+] /opt/apps/spack/py-pip-23.0-lxkcvby [+] /opt/apps/spack/git-2.45.1-zu6qkoc [+] /opt/apps/spack/py-markupsafe-2.1.3-isgtki6 [+] /opt/apps/spack/py-wheel-0.41.2-brm3k3h ==> Installing py-extension-helpers-0.1-a5hmr6jtrvpcq3ibwkwhvwlydthjif5a [49/57] ==> No binary for py-extension-helpers-0.1-a5hmr6jtrvpcq3ibwkwhvwlydthjif5a found: installing from source ==> Fetching |
||
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.devcontainer | ||
.github | ||
bin | ||
etc/spack/defaults | ||
lib/spack | ||
share/spack | ||
var/spack | ||
.codecov.yml | ||
.dockerignore | ||
.flake8 | ||
.git-blame-ignore-revs | ||
.gitattributes | ||
.gitignore | ||
.mailmap | ||
.readthedocs.yml | ||
CHANGELOG.md | ||
CITATION.cff | ||
COPYRIGHT | ||
LICENSE-APACHE | ||
LICENSE-MIT | ||
NOTICE | ||
pyproject.toml | ||
pytest.ini | ||
README.md | ||
SECURITY.md |
Spack is a multi-platform package manager that builds and installs multiple versions and configurations of software. It works on Linux, macOS, Windows, and many supercomputers. Spack is non-destructive: installing a new version of a package does not break existing installations, so many configurations of the same package can coexist.
Spack offers a simple "spec" syntax that allows users to specify versions and configuration options. Package files are written in pure Python, and specs allow package authors to write a single script for many different builds of the same package. With Spack, you can build your software all the ways you want to.
See the Feature Overview for examples and highlights.
To install spack and your first package, make sure you have Python. Then:
$ git clone -c feature.manyFiles=true https://github.com/spack/spack.git
$ cd spack/bin
$ ./spack install zlib
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run spack help
or spack help --all
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For a cheat sheet on Spack syntax, run spack help --spec
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- Todd Gamblin, Matthew P. LeGendre, Michael R. Collette, Gregory L. Lee, Adam Moody, Bronis R. de Supinski, and W. Scott Futral. The Spack Package Manager: Bringing Order to HPC Software Chaos. In Supercomputing 2015 (SC’15), Austin, Texas, November 15-20 2015. LLNL-CONF-669890.
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LLNL-CODE-811652