eea786f4e8
- remove the old LGPL license headers from all files in Spack - add SPDX headers to all files - core and most packages are (Apache-2.0 OR MIT) - a very small number of remaining packages are LGPL-2.1-only
34 lines
1.4 KiB
Python
34 lines
1.4 KiB
Python
# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RDose(RPackage):
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"""This package implements five methods proposed by Resnik, Schlicker,
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Jiang, Lin and Wang respectively for measuring semantic similarities
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among DO terms and gene products. Enrichment analyses including
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hypergeometric model and gene set enrichment analysis are also
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implemented for discovering disease associations of high-throughput
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biological data."""
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homepage = "https://www.bioconductor.org/packages/DOSE/"
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git = "https://git.bioconductor.org/packages/DOSE.git"
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version('3.2.0', commit='71f563fc39d02dfdf65184c94e0890a63b96b86b')
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depends_on('r@3.4.0:3.4.9', when='@3.2.0')
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depends_on('r-scales', type=('build', 'run'))
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depends_on('r-s4vectors', type=('build', 'run'))
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depends_on('r-reshape2', type=('build', 'run'))
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depends_on('r-qvalue', type=('build', 'run'))
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depends_on('r-igraph', type=('build', 'run'))
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depends_on('r-gosemsim', type=('build', 'run'))
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depends_on('r-ggplot2', type=('build', 'run'))
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depends_on('r-fgsea', type=('build', 'run'))
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depends_on('r-do-db', type=('build', 'run'))
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depends_on('r-biocparallel', type=('build', 'run'))
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depends_on('r-annotationdbi', type=('build', 'run'))
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