55 lines
2.4 KiB
Python
55 lines
2.4 KiB
Python
##############################################################################
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# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Shoremap(MakefilePackage):
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"""SHOREmap is a computational tool implementing a method that enables
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simple and straightforward mapping-by-sequencing analysis.
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Whole genome resequencing of pools of recombinant mutant genomes allows
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directly linking phenotypic traits to causal mutations. Such an
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analysis, called mapping-by-sequencing, combines classical genetic
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mapping and next generation sequencing by relying on selection-induced
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patterns within genome-wide allele frequency in pooled genomes."""
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homepage = "http://bioinfo.mpipz.mpg.de/shoremap/"
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url = "http://bioinfo.mpipz.mpg.de/shoremap/SHOREmap_v3.6.tar.gz"
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version('3.6', 'ccc9331189705a139d50f2c161178cb1')
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depends_on('dislin')
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def edit(self, spec, prefix):
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makefile = FileFilter('makefile')
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makefile.filter(r'-L/usr/lib/',
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self.spec['libxt'].libs.search_flags)
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makefile.filter(r'-L\./dislin.* -ldislin_d',
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self.spec['dislin:d'].libs.ld_flags)
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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install('SHOREmap', prefix.bin)
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