249 lines
9.8 KiB
Python
249 lines
9.8 KiB
Python
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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import os
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from spack import *
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class Adios2(CMakePackage):
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"""The Adaptable Input Output System version 2,
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developed in the Exascale Computing Program"""
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homepage = "https://csmd.ornl.gov/software/adios2"
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url = "https://github.com/ornladios/ADIOS2/archive/v2.6.0.tar.gz"
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git = "https://github.com/ornladios/ADIOS2.git"
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maintainers = ['ax3l', 'chuckatkins', 'williamfgc']
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tags = ['e4s']
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version('master', branch='master')
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version('2.7.1', sha256='c8e237fd51f49d8a62a0660db12b72ea5067512aa7970f3fcf80b70e3f87ca3e')
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version('2.7.0', sha256='4b5df1a1f92d7ff380416dec7511cfcfe3dc44da27e486ed63c3e6cffb173924')
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version('2.6.0', sha256='45b41889065f8b840725928db092848b8a8b8d1bfae1b92e72f8868d1c76216c')
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version('2.5.0', sha256='7c8ff3bf5441dd662806df9650c56a669359cb0185ea232ecb3578de7b065329')
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version('2.4.0', sha256='50ecea04b1e41c88835b4b3fd4e7bf0a0a2a3129855c9cc4ba6cf6a1575106e2')
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version('2.3.1', sha256='3bf81ccc20a7f2715935349336a76ba4c8402355e1dc3848fcd6f4c3c5931893')
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# general build options
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variant('mpi', default=True, description='Enable MPI')
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variant('build_type', default='Release',
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description='CMake build type',
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values=('Debug', 'Release', 'RelWithDebInfo', 'MinSizeRel'))
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variant('shared', default=True,
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description='Also build shared libraries')
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variant('pic', default=True,
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description='Enable position independent code '
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'(for usage of static in shared downstream deps)')
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variant('endian_reverse', default=False,
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description='Enable endian conversion if a different '
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'endianness is detected between write and read.')
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# compression libraries
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variant('blosc', default=True,
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description='Enable Blosc compression')
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variant('bzip2', default=True,
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description='Enable BZip2 compression')
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variant('zfp', default=True,
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description='Enable ZFP compression')
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variant('png', default=True,
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description='Enable PNG compression')
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variant('sz', default=True,
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description='Enable SZ compression')
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# transport engines
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variant('sst', default=True,
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description='Enable the SST staging engine')
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variant('dataman', default=False,
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description='Enable the DataMan engine for WAN transports')
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variant('dataspaces', default=False,
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description='Enable support for DATASPACES')
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variant('ssc', default=True,
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description='Enable the SSC staging engine')
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variant('hdf5', default=False,
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description='Enable the HDF5 engine')
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# optional language bindings, C++11 and C always provided
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variant('python', default=False,
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description='Enable the Python bindings')
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variant('fortran', default=True,
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description='Enable the Fortran bindings')
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# requires mature C++11 implementations
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conflicts('%gcc@:4.7')
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conflicts('%intel@:15')
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conflicts('%pgi@:14')
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# shared libs must have position-independent code
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conflicts('+shared ~pic')
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# DataMan needs dlopen
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conflicts('+dataman', when='~shared')
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depends_on('cmake@3.12.0:', type='build')
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depends_on('pkgconfig', type='build')
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depends_on('libffi', when='+sst') # optional in DILL
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depends_on('libfabric@1.6.0:', when='+sst') # optional in EVPath and SST
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# depends_on('bison', when='+sst') # optional in FFS, broken package
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# depends_on('flex', when='+sst') # optional in FFS, depends on BISON
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depends_on('mpi', when='+mpi')
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depends_on('libzmq', when='+dataman')
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depends_on('dataspaces@1.8.0:', when='+dataspaces')
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depends_on('hdf5', when='+hdf5')
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depends_on('hdf5+mpi', when='+hdf5+mpi')
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depends_on('c-blosc', when='@2.4: +blosc')
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depends_on('bzip2', when='@2.4: +bzip2')
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depends_on('libpng@1.6:', when='@2.4: +png')
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depends_on('zfp@0.5.1:', when='+zfp')
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depends_on('sz@2.0.2.0:', when='+sz')
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extends('python', when='+python')
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depends_on('python@2.7:2.8,3.5:', when='@:2.4.0 +python', type=('build', 'run'))
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depends_on('python@3.5:', when='@2.5.0: +python', type=('build', 'run'))
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depends_on('python@2.7:2.8,3.5:', when='@:2.4.0', type='test')
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depends_on('python@3.5:', when='@2.5.0:', type='test')
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depends_on('py-numpy@1.6.1:', type=('build', 'run'), when='+python')
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depends_on('py-mpi4py@2.0.0:', type=('build', 'run'), when='+mpi +python')
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# Fix findmpi when called by dependees
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# See https://github.com/ornladios/ADIOS2/pull/1632
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patch('cmake-update-findmpi.patch', when='@2.4.0')
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# Fix the signature of the builtin clear_cache function in the
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# third-party dill library.
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# See https://github.com/ornladios/ADIOS2/pull/1899
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patch('2.5-fix-clear_cache.patch', when='@2.5.0')
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# Fix an unnecessary python dependency when testing is disabled
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# See https://github.com/ornladios/ADIOS2/pull/2596
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patch('2.7-fix-python-test-deps.patch', when='@2.5.0:2.7.0')
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# Fix unresolved symbols when built with gcc10.
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# See https://github.com/ornladios/ADIOS2/pull/2714
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patch('2.6-fix-gcc10-symbols.patch', when='@2.6.0')
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# Add missing include <memory>
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# https://github.com/ornladios/adios2/pull/2710
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patch('https://github.com/ornladios/adios2/pull/2710.patch', when='@:2.7.1',
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sha256='8d301e8232baf4049b547f22bd73774309662017a62dac36360d2965907062bf')
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@when('%fj')
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def patch(self):
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""" add fujitsu mpi commands #16864 """
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f = join_path('cmake', 'upstream', 'FindMPI.cmake')
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filter_file('mpcc_r)', 'mpcc_r mpifcc)', f, string=True)
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filter_file('mpc++_r)', 'mpcc_r mpiFCC)', f, string=True)
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filter_file('mpf77_r', 'mpf77_r mpifrt', f, string=True)
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def setup_build_environment(self, env):
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# https://github.com/ornladios/ADIOS2/issues/2228
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if self.spec.satisfies('%gcc@10: +fortran'):
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env.set('FFLAGS', '-fallow-argument-mismatch')
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elif self.spec.satisfies('%fj +fortran'):
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env.set('FFLAGS', '-Ccpp')
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def cmake_args(self):
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spec = self.spec
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from_variant = self.define_from_variant
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args = [
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from_variant('BUILD_SHARED_LIBS', 'shared'),
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'-DADIOS2_BUILD_EXAMPLES=OFF',
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from_variant('ADIOS2_USE_MPI', 'mpi'),
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'-DADIOS2_USE_MGARD=OFF',
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from_variant('ADIOS2_USE_ZFP', 'zfp'),
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from_variant('ADIOS2_USE_SZ', 'sz'),
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from_variant('ADIOS2_USE_DataMan', 'dataman'),
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from_variant('ADIOS2_USE_SST', 'sst'),
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from_variant('ADIOS2_USE_HDF5', 'hdf5'),
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from_variant('ADIOS2_USE_Python', 'python'),
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from_variant('ADIOS2_USE_Fortran', 'fortran'),
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from_variant('ADIOS2_USE_Endian_Reverse', 'endian_reverse'),
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self.define('BUILD_TESTING', self.run_tests),
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]
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if spec.version >= Version('2.4.0'):
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args.append(from_variant('ADIOS2_USE_Blosc', 'blosc'))
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args.append(from_variant('ADIOS2_USE_BZip2', 'bzip2'))
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args.append(from_variant('ADIOS2_USE_PNG', 'png'))
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args.append(from_variant('ADIOS2_USE_SSC', 'ssc'))
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if spec.version >= Version('2.5.0'):
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args.append(from_variant('ADIOS2_USE_DataSpaces', 'dataspaces'))
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if spec.version >= Version('2.6.0'):
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args.append('-DADIOS2_USE_IME=OFF')
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if '+sst' in spec:
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args.extend([
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# Broken dependency package
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'-DCMAKE_DISABLE_FIND_PACKAGE_BISON=TRUE',
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# Depends on ^
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'-DCMAKE_DISABLE_FIND_PACKAGE_FLEX=TRUE',
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# Not yet packaged
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'-DCMAKE_DISABLE_FIND_PACKAGE_CrayDRC=TRUE',
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'-DCMAKE_DISABLE_FIND_PACKAGE_NVSTREAM=TRUE'
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])
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if spec.satisfies('~shared'):
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args.append(from_variant('CMAKE_POSITION_INDEPENDENT_CODE', 'pic'))
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if spec.satisfies('%fj'):
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args.extend([
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'-DCMAKE_Fortran_SUBMODULE_EXT=.smod',
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'-DCMAKE_Fortran_SUBMODULE_SEP=.'
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])
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if spec.satisfies('+python') or self.run_tests:
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args.append('-DPYTHON_EXECUTABLE:FILEPATH=%s'
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% spec['python'].command.path)
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return args
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@property
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def libs(self):
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spec = self.spec
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libs_to_seek = set()
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if spec.satisfies('@2.6:'):
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libs_to_seek.add('libadios2_core')
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libs_to_seek.add('libadios2_c')
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libs_to_seek.add('libadios2_cxx11')
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if '+fortran' in spec:
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libs_to_seek.add('libadios2_fortran')
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if '+mpi' in spec:
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libs_to_seek.add('libadios2_core_mpi')
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libs_to_seek.add('libadios2_c_mpi')
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libs_to_seek.add('libadios2_cxx11_mpi')
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if '+fortran' in spec:
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libs_to_seek.add('libadios2_fortran_mpi')
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if (self.spec.satisfies('@2.7: +shared+hdf5') and
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self.spec['hdf5'].satisfies('@1.12:')):
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libs_to_seek.add('libadios2_h5vol')
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else:
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libs_to_seek.add('libadios2')
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if '+fortran' in spec:
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libs_to_seek.add('libadios2_fortran')
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return find_libraries(list(libs_to_seek), root=self.spec.prefix,
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shared=('+shared' in spec), recursive=True)
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def setup_run_environment(self, env):
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try:
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all_libs = self.libs
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idx = all_libs.basenames.index('libadios2_h5vol.so')
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env.prepend_path('HDF5_PLUGIN_PATH', os.path.dirname(all_libs[idx]))
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except ValueError:
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pass
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