47 lines
1.5 KiB
Python
47 lines
1.5 KiB
Python
# Copyright Spack Project Developers. See COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class PerlBioEnsemblIo(Package):
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"""File parsing and writing code for Ensembl."""
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homepage = "https://github.com/Ensembl/ensembl-io/"
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url = "https://github.com/Ensembl/ensembl-io/archive/release/111.zip"
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maintainers("teaguesterling")
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license("APACHE-2.0", checked_by="teaguesterling")
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for vers, sha in [
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("112", "ccbffe7c15318075463db46be348655a5914762e05ff47da2d72a4c99414d39a"),
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("111", "f81d4c1aea88aac7105aaa3fec548e39b79f129c7abc08b55be7d0345aa5482c"),
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("110", "83cf00ecdb6184be480fc3cbf0ffc322d3e9411e14602396fda8d153345d6c2e"),
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]:
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version(vers, sha256=sha)
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depends_on(f"perl-bio-ensembl@{vers}", when=f"@{vers}")
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extends("perl")
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variant("scripts", default=False, description="Install scripts")
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depends_on("perl-bio-bigfile")
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depends_on("perl-bio-db-hts")
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depends_on("perl-bio-ensembl")
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depends_on("perl-bioperl@1.6.924")
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depends_on("perl-compress-bzip2")
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depends_on("perl-json")
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depends_on("perl-try-tiny")
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depends_on("perl-uri")
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depends_on("vcftools")
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def install(self, spec, prefix):
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install_tree("modules", prefix.lib.perl5)
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mkdirp(prefix.share.ensembl)
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for extra in ["scripts"]:
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if spec.satisfies(f"+{extra}"):
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extra = extra.replace("_", "-")
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target = join_path(prefix.share.ensembl, extra)
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install_tree(extra, target)
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