54 lines
2.3 KiB
Python
54 lines
2.3 KiB
Python
##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/llnl/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Microbiomeutil(MakefilePackage):
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"""Microbiome analysis utilities"""
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homepage = "http://microbiomeutil.sourceforge.net/"
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url = "https://downloads.sourceforge.net/project/microbiomeutil/microbiomeutil-r20110519.tgz"
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version('20110519', '11eaac4b0468c05297ba88ec27bd4b56')
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depends_on('perl', type=('build', 'run'))
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depends_on('blast-plus')
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depends_on('cdbfasta')
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def install(self, spec, prefix):
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install_tree('ChimeraSlayer', prefix.ChimeraSlayer)
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install_tree('NAST-iEr', join_path(prefix, 'NAST-iEr'))
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install_tree('TreeChopper', prefix.TreeChopper)
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install_tree('WigeoN', prefix.WigeoN)
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install_tree('docs', prefix.docs)
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install_tree('RESOURCES', prefix.resources)
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install_tree('AmosCmp16Spipeline', prefix.AmosCmp16Spipeline)
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def setup_environment(self, spack_env, run_env):
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run_env.prepend_path('PATH', self.prefix.ChimeraSlayer)
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run_env.prepend_path('PATH', join_path(self.prefix, 'NAST-iEr'))
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run_env.prepend_path('PATH', self.prefix.TreeChopper)
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run_env.prepend_path('PATH', self.prefix.WigeoN)
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