26 lines
1.1 KiB
Python
26 lines
1.1 KiB
Python
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class RFdbInfiniummethylationHg19(RPackage):
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"""Annotation package for Illumina Infinium DNA methylation probes.
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Compiled HumanMethylation27 and HumanMethylation450 annotations."""
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# No available git repository
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bioc = "FDb.InfiniumMethylation.hg19"
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url = "https://bioconductor.org/packages/release/data/annotation/src/contrib/FDb.InfiniumMethylation.hg19_2.2.0.tar.gz"
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version("2.2.0", sha256="605aa3643588a2f40a942fa760b92662060a0dfedb26b4e4cd6f1a78b703093f")
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depends_on("r@2.10:", type=("build", "run"))
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depends_on("r-genomicfeatures@1.7.22:", type=("build", "run"))
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depends_on("r-txdb-hsapiens-ucsc-hg19-knowngene", type=("build", "run"))
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depends_on("r-org-hs-eg-db", type=("build", "run"))
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depends_on("r-annotationdbi", type=("build", "run"))
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depends_on("r-biostrings", type=("build", "run"))
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